BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN15708 (UTR included)
(2434 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01026A1E02 856 0.0
>BF01026A1E02
Length = 716
Score = 856 bits (432), Expect = 0.0
Identities = 578/623 (92%), Gaps = 11/623 (1%)
Strand = Plus / Plus
Query: 879 gtcatggctgaggaggtgtgccccgacctaaaaaaaaaatttgaaaatataagtctttct 938
|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 103 gtcatggctgaggaggtgtgccccgacctaaaaaaaaa--ttgaaaatataagcctttct 160
Query: 939 gcaagaacatgtactcgccgaactgaagatttgggcgat--aatttatgccagcaactcc 996
||||||||||||||||| ||| ||||||||||||||||| |||||||| ||||||||||
Sbjct: 161 gcaagaacatgtactcggcgagctgaagatttgggcgatttaatttatgtcagcaactcc 220
Query: 997 gggaaaaagcacaacaatttgaatggttctctttagctaccgatgaaagtaatgatgtta 1056
||||||||||||||||||||||||| ||||||| ||| |||||||| ||||||||||
Sbjct: 221 gggaaaaagcacaacaatttgaatgattctcttaagc----gatgaaagcaatgatgtta 276
Query: 1057 ctgacactgcccagtttttaatatttgttcgcggaatcgataagaattttaatgtctatg 1116
|||| |||| ||| |||||||||||| |||| |||||||||||||||| |||||||||
Sbjct: 277 ctgatactgagcagcctttaatatttgtccgcgaaatcgataagaatttttatgtctatg 336
Query: 1117 aggagcttttacagttatgtagtttgaagggcacgactaccggagaagatttgttttgta 1176
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 aggggcttttacagttatttagtttgaagggcacgactaccggagaagatttgttttgta 396
Query: 1177 acttagaacaagcgctaatatcaatgcaattaccatgggaaaaattggtaagtgttacaa 1236
||||||||||||||||| |||||||||||| |||| ||||||||||||| ||||||||
Sbjct: 397 acttagaacaagcgctagtatcaatgcaatggccataggaaaaattggta--tgttacaa 454
Query: 1237 ctgacggaggcagaaacatgagtggacaaaataaaggtttggtaggtagaattaaatcaa 1296
|| ||| | ||||| |||| |||||||||||||| ||||||||||||||||||||||| |
Sbjct: 455 ctcacgaaagcagagacataagtggacaaaataagggtttggtaggtagaattaaatcga 514
Query: 1297 aactggcagagataggatgtgccatcccattatttttccattgcatcatccaccaagaag 1356
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 515 aactggcagagataggatgtgccatcccattatttttccattgcgtcatccaccaagaag 574
Query: 1357 cgttatgttccaaggtcgtatcatggaaagaagtaatggacatcgtggtatcgactgtaa 1416
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 575 cgttatgttccaaagtcgtatcatggaaagaagtaatggacat-gtggtatcgactgtaa 633
Query: 1417 actacatcagaaaaaatggattgactcatcgtcaatttcaacagtttctgtcagatacgg 1476
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 actacatcagaaannntggattgactcatcgtcaatttcaacagtttctgtcagatacgg 693
Query: 1477 aagcagatcatcgagatgttgtt 1499
|||| ||||||||||||||||||
Sbjct: 694 aagctgatcatcgagatgttgtt 716
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 372,613
Number of extensions: 7444
Number of successful extensions: 7444
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 7439
Number of HSP's successfully gapped: 1
Length of query: 2434
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 2417
Effective length of database: 8,119,229
Effective search space: 19624176493
Effective search space used: 19624176493
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)