BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN15884 (UTR included)
(1669 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF14_2481_C1 694 0.0
>BF14_2481_C1
Length = 845
Score = 694 bits (350), Expect = 0.0
Identities = 359/362 (99%)
Strand = Plus / Plus
Query: 486 gaggtgtggggtctgatgcgtcgcgtgtcgtgtctccgtgcggaggcgctccgtctgtgc 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 gaggtgtggggtctgatgcgtcgcgtgtcgtgtctccgtgcggaggcgctccgtctgtgc 412
Query: 546 ggcgccttacaggaggcgagctgtgagggcgcggaaaccgcgtgggcagagctgctggcc 605
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 413 ggcgccttacaggaggcgagctgtgagggcgcggagaccgcgtgggcagagctgctggcc 472
Query: 606 gccgccgctgagaggagacatcttgacacactactggctctgcaccaccgagctctagac 665
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 gccgccgctgagaggaggcatcttgacacactactggctctgcaccaccgagctctagac 532
Query: 666 cgacactccatacacgccatgatacaccacaccacgcaggaactgcagtcatatttgggc 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 cgacactccatacacgccatgatacaccacaccacgcaggaactgcagtcatatttgggc 592
Query: 726 aatgtattaaacgaaatattagctttacgaagcttcgagactacacttcacactggaatc 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 aatgtattaaacgaaatattagctttacgaagcttcgagactacacttcacactggaatc 652
Query: 786 agtgcggagcttgagcgaagagaccaactgagagagttgaaggctgaacgaatttctcga 845
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 653 agtgcggagcttgagcgaagagaccaactgagagagttgaaggctgaaagaatttctcga 712
Query: 846 gg 847
||
Sbjct: 713 gg 714
Score = 331 bits (167), Expect = 2e-90
Identities = 167/167 (100%)
Strand = Plus / Plus
Query: 1 gacggacgcgaggatagcgggtgggacgttttcgctctacaataccgtgtggacggaccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 gacggacgcgaggatagcgggtgggacgttttcgctctacaataccgtgtggacggaccc 208
Query: 61 ctgggtaccttgttcccggccacgtgtgccgcccgttatagagctctcttcacacagctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 ctgggtaccttgttcccggccacgtgtgccgcccgttatagagctctcttcacacagctg 268
Query: 121 tggcgcgttaagaggatcgaacacgccctgcatcacgcctggcgcga 167
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tggcgcgttaagaggatcgaacacgccctgcatcacgcctggcgcga 315
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 237,471
Number of extensions: 5207
Number of successful extensions: 5207
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 5207
Number of HSP's successfully gapped: 2
Length of query: 1669
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1652
Effective length of database: 8,119,229
Effective search space: 13412966308
Effective search space used: 13412966308
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)