BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN15915 (UTR included)
(5362 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF14_3457_C1 1562 0.0
>BF14_3457_C1
Length = 1004
Score = 1562 bits (788), Expect = 0.0
Identities = 838/854 (98%), Gaps = 3/854 (0%)
Strand = Plus / Plus
Query: 4512 gccagatatgatttcgtttacagaaacagtttgcgtaggaacagttacagcttggataat 4571
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gccagatctgatttcgtttacagaaacagtttgcgtaggaacagttacagcttggataat 60
Query: 4572 aattgctacagaacaaacgttctgaccaagtctgacagggtgatactctgcaagttgttg 4631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aattgctacagaacaaacgttctgaccaagtctgacagggtgatactctgcaagttgttg 120
Query: 4632 gattgtcagacgactaaaggtaacgactggaggttgctcgcggaaaaattaaagctaacg 4691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gattgtcagacgactaaaggtaacgactggaggttgctcgcggaaaaattaaagctaacg 180
Query: 4692 tccttctattactatttctctaacacttgctctccgactgagaatatattgaatctttgg 4751
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 181 tccttctattactatttctctaacacttgctctccgaccgagaatatattgaatctttgg 240
Query: 4752 ttatgcagaaacaacgatgtcaatatgttaataagtttatcgcgggtgtttagggagatg 4811
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 241 ttatgcagaaacaacgatgtcaatatgttaataagtttatcgcgggtgtttagagagatg 300
Query: 4812 tctcggatagactgcgcgactgttatcgaaaggcgctgttttcctaattagactgatttt 4871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tctcggatagactgcgcgactgttatcgaaaggcgctgttttcctaattagactgatttt 360
Query: 4872 tatttatacttaagaccacttctgtcaacccacagtcctatgtagctgagcattaatttt 4931
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tatttatacctaagaccacttctgtcaacccacagtcctatgtagctgagcattaatttt 420
Query: 4932 agtttgttgatttttcattatattttttattgtaatcgtattatgacatattaacaaggc 4991
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 421 agtttgttgatttttaattatattttttattgtaatcgtattataacatattaacaaggc 480
Query: 4992 tcgttgtgttagaaatatctcgtggaattaacgttttattttttttatttaagcaactaa 5051
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct: 481 tcgttgtgttaaaaatatctcgtggaattaactttttattttttttatttaagcaacgaa 540
Query: 5052 aaaatgggctctagtcatttatttttacaactttttaaagaatggtaataaaaacaatgt 5111
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 caaatgggctctagtcatttatttttacaactttttaaagaatggtaataaaaacaatgt 600
Query: 5112 tt---ttcatacaaatagtttattaagaaaattatttagatcaggattcgaataaagttt 5168
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttttcttcatacaaatagtttattaagaaaattatttagatcaggattcgaataaagttt 660
Query: 5169 tggaatagagtaagtctaaaatggtaaatataataattttcataaatcacatacattttg 5228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tggaatagagtaagtctaaaatggtaaatataataattttcataaatcacatacattttg 720
Query: 5229 tatacaaagtgtgaatctgatttattgaatattaatacaacgatattaagaaaaatctga 5288
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 721 tatacaaagtgtgaatctgatttattgaatattaatacaacgatattaagaaaactctga 780
Query: 5289 cttagctttagaggacaaatcgagagcaattttgatttgtttagaaccaaaactattgtc 5348
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 781 cttagctttagaggacaaatcgagagtaactttgatttgtttagaaccaaaactattgtc 840
Query: 5349 acttctgttaatat 5362
||||||||||||||
Sbjct: 841 acttctgttaatat 854
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 559,606
Number of extensions: 10536
Number of successful extensions: 10536
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 10535
Number of HSP's successfully gapped: 1
Length of query: 5362
Length of database: 8,280,457
Length adjustment: 18
Effective length of query: 5344
Effective length of database: 8,109,745
Effective search space: 43338477280
Effective search space used: 43338477280
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 35 (69.9 bits)