BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN15923 (UTR included)
(1330 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01031B2E06 123 8e-28
BF01020A2G03 105 2e-22
BF14_335_C2 105 2e-22
>BF01031B2E06
Length = 707
Score = 123 bits (62), Expect = 8e-28
Identities = 104/118 (88%)
Strand = Plus / Plus
Query: 528 ctcactaagaataggttcgtcgtaaatttgtacgcggtagaagtgggagcgagatgtgta 587
|||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||
Sbjct: 488 ctcactaagaataggttcgtggcaaatttgtacgcggtagaagtgggagcgagcgttgta 547
Query: 588 actgctaaatctctttacaacctactagaagacttgggtctgtccagaactaacatca 645
| ||||||||||| ||||||||||| || |||||| ||||||||| |||||||||
Sbjct: 548 aaagctaaatctctccacaacctactaaaaaccttgggcctgtccagatctaacatca 605
>BF01020A2G03
Length = 760
Score = 105 bits (53), Expect = 2e-22
Identities = 53/53 (100%)
Strand = Plus / Minus
Query: 685 cgcgaggaaggcgacacgcggcgcagcagtttgtactcggcgactatcgacta 737
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53 cgcgaggaaggcgacacgcggcgcagcagtttgtactcggcgactatcgacta 1
>BF14_335_C2
Length = 1827
Score = 105 bits (53), Expect = 2e-22
Identities = 131/156 (83%), Gaps = 7/156 (4%)
Strand = Plus / Minus
Query: 528 ctcactaagaataggttcgtcgtaaa-tttgtacgcggtagaagtgggagc------gag 580
||||||| |||||||||||| |||| |||||||| |||||||||||||| |||
Sbjct: 1164 ctcactaggaataggttcgtaataaaatttgtacgtggtagaagtgggagaaagtgagag 1105
Query: 581 atgtgtaactgctaaatctctttacaacctactagaagacttgggtctgtccagaactaa 640
| || |||| ||||||||||| |||| ||||||| || ||||||| ||||||||||||||
Sbjct: 1104 aggtataacagctaaatctctctacagcctactaaaatacttgggcctgtccagaactaa 1045
Query: 641 catcagttcattcttggaacgtgcgtcgaaggcagc 676
|| |||||||||||| |||||| | |||||| ||||
Sbjct: 1044 caccagttcattcttcgaacgtacttcgaagacagc 1009
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 139,390
Number of extensions: 2588
Number of successful extensions: 2588
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2588
Number of HSP's successfully gapped: 3
Length of query: 1330
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1313
Effective length of database: 8,119,229
Effective search space: 10660547677
Effective search space used: 10660547677
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)