BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN15983 (UTR included)
(1294 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01047B2H03 165 2e-40
BF01060B1D11 141 3e-33
>BF01047B2H03
Length = 758
Score = 165 bits (83), Expect = 2e-40
Identities = 238/286 (83%), Gaps = 9/286 (3%)
Strand = Plus / Minus
Query: 726 ctctataaacacctaagagtttccaaaagacatatcctggggaaatcccaggatgacgtt 785
|||||||||||| ||||||||||||| |||||||||| ||||||| |||| |||| ||
Sbjct: 733 ctctataaacacttaagagtttccaagagacatatcccggggaaagcccataatgatgtc 674
Query: 786 attacataactcccaaaagacaatgatgtcc------tagagatcgagacttcaattcca 839
||||||| |||| ||||| | | |||| || || || || ||||||||||||||
Sbjct: 673 attacatcactctcaaaaaatagagatgcccctgaactaaag-tcaagacttcaattcca 615
Query: 840 cgaacagtttatgataggcgcacaaagtaat-agagtagagttagtatcaagtaggaagg 898
|||||||||||||||| ||||||||||| ||||||| |||| |||||| | |||||
Sbjct: 614 taaacagtttatgataggagcacaaagtaacgagagtaggattaggatcaaggaagaagg 555
Query: 899 ccaaagatacggatatattaaagacctttattcggcaagacgagaattctaaatataaga 958
|| |||||||||||||||| ||| | ||||||||||||||||||||| | |||||| |
Sbjct: 554 cccaagatacggatatattgaagtcttttattcggcaagacgagaatgatggatataaca 495
Query: 959 tccatgcaatgagttt-gaaatgcagaatgagtggctacacataga 1003
|||||||||||||||| || |||||||| |||||| || |||||||
Sbjct: 494 tccatgcaatgagtttagatatgcagaacgagtggttagacataga 449
Score = 101 bits (51), Expect = 3e-21
Identities = 103/119 (86%), Gaps = 1/119 (0%)
Strand = Plus / Minus
Query: 1143 atctgcggggaggcagttggaactgctgagcatttgctggtgggatgtagggtactccta 1202
||||||| |||||||||||||| |||||||||||||||| ||||||||||| |||||||
Sbjct: 355 atctgcgaggaggcagttggaattgctgagcatttgctgatgggatgtaggctactcctg 296
Query: 1203 gatagaggtcagtact-cgcgtcgccacgatagggttttagaaatcatacgtgaagcgg 1260
||||| ||||| |||| | ||| ||| |||||||||||| | |||||| ||||||||
Sbjct: 295 gatagcggtcaatactaccggtctccatgatagggttttaaatttcatacatgaagcgg 237
>BF01060B1D11
Length = 799
Score = 141 bits (71), Expect = 3e-33
Identities = 234/286 (81%), Gaps = 8/286 (2%)
Strand = Plus / Minus
Query: 726 ctctataaacacctaagagtttccaaaagacatatcctggggaaatcccaggatgacgtt 785
|||||||||||| ||||||||||||| |||||||||| ||||||| |||| |||| ||
Sbjct: 562 ctctataaacacttaagagtttccaagagacatatcccggggaaagcccataatgatgtc 503
Query: 786 attacataactcccaaaagacaatgatgtcctagagatc------gagacttcaattcca 839
||||||| |||||||||| | |||| || ||| | |||||||||||||||
Sbjct: 502 attacatcactcccaaaaaccggagatggcccagaactaaagtctgagacttcaattcca 443
Query: 840 cgaacagtttatgataggcgcacaaagtaa-tagagtagagttagtatcaagtaggaagg 898
| |||||||||||||||| ||||||||||| ||||||| |||| |||||| | |||||
Sbjct: 442 caaacagtttatgataggagcacaaagtaacgagagtaggattaggatcaaggaagaagg 383
Query: 899 ccaaagatacggatatattaaagacctttattcggcaagacgagaattctaaatataaga 958
| |||||| ||||||||| ||| ||||||| ||||||||||||| | ||||||||
Sbjct: 382 ctcaagatatggatatattgaagtattttattcagcaagacgagaatgatggatataaga 323
Query: 959 tccatgcaatgagttt-gaaatgcagaatgagtggctacacataga 1003
||||||||||| |||| || |||||||| |||||| || |||||||
Sbjct: 322 tccatgcaatgcgtttagagatgcagaacgagtggttagacataga 277
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 139,370
Number of extensions: 2733
Number of successful extensions: 2733
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2730
Number of HSP's successfully gapped: 5
Length of query: 1294
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1277
Effective length of database: 8,119,229
Effective search space: 10368255433
Effective search space used: 10368255433
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)