BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN16102 (UTR included)
(3484 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF14_93_C1 78 1e-13
>BF14_93_C1
Length = 1998
Score = 77.8 bits (39), Expect = 1e-13
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 2286 atggtgaagatctaccagtcccgacaccccgacgtgaacgctcgtgcacacgccaccttc 2345
||||||||||||||||||||||| ||| ||||| | ||||| || || ||||||||||||
Sbjct: 1906 atggtgaagatctaccagtcccgccacgccgacatcaacgcacgagctcacgccaccttc 1965
Query: 2346 ggcgtgctcgc 2356
|| ||||||||
Sbjct: 1966 ggagtgctcgc 1976
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 264,929
Number of extensions: 4930
Number of successful extensions: 4930
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 4930
Number of HSP's successfully gapped: 1
Length of query: 3484
Length of database: 8,280,457
Length adjustment: 18
Effective length of query: 3466
Effective length of database: 8,109,745
Effective search space: 28108376170
Effective search space used: 28108376170
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 35 (69.9 bits)