BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN16217 (UTR included)
(1186 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01047B2H03 96 2e-19
BF01037A2H12 94 6e-19
BF01031B2E06 84 6e-16
BF14_335_C2 78 4e-14
BF01060B1D11 74 6e-13
>BF01047B2H03
Length = 758
Score = 95.6 bits (48), Expect = 2e-19
Identities = 106/124 (85%), Gaps = 1/124 (0%)
Strand = Plus / Minus
Query: 40 tcaagacttcaattccataaactgtttatgataggagcacaaagtaac-agattatggtt 98
|||||||||||||||||||||| ||||||||||||||||||||||||| ||| || | ||
Sbjct: 631 tcaagacttcaattccataaacagtttatgataggagcacaaagtaacgagagtaggatt 572
Query: 99 tgtatcaaataggaaggccaaagatacgagcatattaaagacctttattcggcaagacaa 158
| ||||| | ||||||| |||||||| ||||| ||| | ||||||||||||||| |
Sbjct: 571 aggatcaaggaagaaggcccaagatacggatatattgaagtcttttattcggcaagacga 512
Query: 159 gaat 162
||||
Sbjct: 511 gaat 508
>BF01037A2H12
Length = 773
Score = 93.7 bits (47), Expect = 6e-19
Identities = 68/75 (90%)
Strand = Plus / Plus
Query: 526 ttgtaaatttgtacgcggtggaagtaggagcaagaggtataacagccaaatctctctaca 585
|||| |||||||||| ||| |||||||||| |||||||||| ||||||||||||| |||
Sbjct: 666 ttgtgaatttgtacgaggtaaaagtaggagcgagaggtataaaagccaaatctctcgaca 725
Query: 586 acctgctaaaagact 600
|||||||||||||||
Sbjct: 726 acctgctaaaagact 740
>BF01031B2E06
Length = 707
Score = 83.8 bits (42), Expect = 6e-16
Identities = 78/90 (86%)
Strand = Plus / Plus
Query: 507 ctcactaagaataggttcgttgtaaatttgtacgcggtggaagtaggagcaagaggtata 566
|||||||||||||||||||| | ||||||||||||||| ||||| ||||| || | | ||
Sbjct: 488 ctcactaagaataggttcgtggcaaatttgtacgcggtagaagtgggagcgagcgttgta 547
Query: 567 acagccaaatctctctacaacctgctaaaa 596
| ||| ||||||||| ||||||| ||||||
Sbjct: 548 aaagctaaatctctccacaacctactaaaa 577
>BF14_335_C2
Length = 1827
Score = 77.8 bits (39), Expect = 4e-14
Identities = 99/119 (83%)
Strand = Plus / Minus
Query: 558 agaggtataacagccaaatctctctacaacctgctaaaagactggggtctgtcagaaact 617
|||||||||||||| ||||||||||||| ||| |||||| ||| ||| ||||| ||||
Sbjct: 1106 agaggtataacagctaaatctctctacagcctactaaaatacttgggcctgtccagaact 1047
Query: 618 aacttcagttcattcttggaacgtgcgtcgaatgtagccctagcaggttcttttcaaat 676
||| |||||||||||| |||||| | ||||| ||| |||| |||||| ||||||||
Sbjct: 1046 aacaccagttcattcttcgaacgtacttcgaagacagctctagtaggttcgtttcaaat 988
>BF01060B1D11
Length = 799
Score = 73.8 bits (37), Expect = 6e-13
Identities = 43/45 (95%)
Strand = Plus / Minus
Query: 43 agacttcaattccataaactgtttatgataggagcacaaagtaac 87
|||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 456 agacttcaattccacaaacagtttatgataggagcacaaagtaac 412
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 156,980
Number of extensions: 3540
Number of successful extensions: 3540
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 3540
Number of HSP's successfully gapped: 5
Length of query: 1186
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1169
Effective length of database: 8,119,229
Effective search space: 9491378701
Effective search space used: 9491378701
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)