BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN16481 (UTR included)
(1207 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01047B2H03 98 4e-20
BF01060B1D11 90 1e-17
>BF01047B2H03
Length = 758
Score = 97.6 bits (49), Expect = 4e-20
Identities = 95/109 (87%), Gaps = 1/109 (0%)
Strand = Plus / Minus
Query: 178 aagaaggccaaagatacggatatattaaagtattttattcggcaagtcgagaatgctaaa 237
||||||||| |||||||||||||||| |||| |||||||||||||| |||||||| | |
Sbjct: 561 aagaaggcccaagatacggatatattgaagtcttttattcggcaagacgagaatgatgga 502
Query: 238 tat-agaaccatgcaatcagtttagagatgtagaacgactggttagaca 285
||| | | ||||||||| |||||||| ||| ||||||| ||||||||||
Sbjct: 501 tataacatccatgcaatgagtttagatatgcagaacgagtggttagaca 453
Score = 73.8 bits (37), Expect = 6e-13
Identities = 91/109 (83%)
Strand = Plus / Minus
Query: 458 tagggctataaaatcaaacgttaagccttactgaatccttaaaatggctccggattggac 517
|||||||||||| |||||| | |||||||||| ||||||||| || | ||||||| ||
Sbjct: 160 tagggctataaagtcaaacatcaagccttactctatccttaaagcggtttcggattgcac 101
Query: 518 tgtaatgatggataattatgagaaacaatacaaaatccccgaggatatt 566
| |||| ||||||| |||| | ||| |||||||||||||||| |||||
Sbjct: 100 tataatcatggatacgtatggggaacgatacaaaatccccgagcatatt 52
>BF01060B1D11
Length = 799
Score = 89.7 bits (45), Expect = 1e-17
Identities = 94/109 (86%), Gaps = 1/109 (0%)
Strand = Plus / Minus
Query: 178 aagaaggccaaagatacggatatattaaagtattttattcggcaagtcgagaatgctaaa 237
|||||||| |||||| ||||||||| ||||||||||||| ||||| |||||||| | |
Sbjct: 389 aagaaggctcaagatatggatatattgaagtattttattcagcaagacgagaatgatgga 330
Query: 238 tat-agaaccatgcaatcagtttagagatgtagaacgactggttagaca 285
||| ||| ||||||||| ||||||||||| ||||||| ||||||||||
Sbjct: 329 tataagatccatgcaatgcgtttagagatgcagaacgagtggttagaca 281
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 166,020
Number of extensions: 2941
Number of successful extensions: 2941
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2940
Number of HSP's successfully gapped: 3
Length of query: 1207
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1190
Effective length of database: 8,119,229
Effective search space: 9661882510
Effective search space used: 9661882510
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)