BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN16489 (UTR included)
(2614 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01038A2F09 781 0.0
BF01044A1D01 82 5e-15
>BF01038A2F09
Length = 798
Score = 781 bits (394), Expect = 0.0
Identities = 429/436 (98%), Gaps = 6/436 (1%)
Strand = Plus / Plus
Query: 2182 aaattttttcataacaccaatttgttaccaaaataaaggattatttttataattagtcat 2241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaattttttcataacaccaatttgttaccaaaataaaggattatttttataattagtcat 60
Query: 2242 acacacatccattaacaacttaggactctgatgtaatggataaagccggacttagatcga 2301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acacacatccattaacaacttaggactctgatgtaatggataaagccggacttagatcga 120
Query: 2302 tgtggggcgttatccattacaatcagcgagtatatttacaagtttcaaattaaaggttaa 2361
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgtggggcgttatccattacactcagcgagtatatttacaagtttcaaattaaaggttaa 180
Query: 2362 acaaaaaaaaaaatatttccccactataagaattgtaaaacggacatattgaacgccacg 2421
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ac-aaaaaaaaaatatttccccactataagaattgtaaaacggacatattgaacgccacg 239
Query: 2422 agttaagttaaaaacaaaagtgcacatgttacag-aaaaaaaaagaccatagacaagaac 2480
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 240 agttaagttaaaaacaaaagtgcacatgttacagaaaaaaaaaagaccatagacaagaac 299
Query: 2481 tataaaaaaaaaaaatgtgagcgaaaaaaattcaccaaac--cagtgtcaaaatacaatt 2538
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 300 tat--aaaaaaaaaatgtgagcgaaaaaaattcaccaaaccacagtgtcaaaatacaatt 357
Query: 2539 cgtatagcgagttaatttattcatagtcattgggaaaacttttaatacagccttggatct 2598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 cgtatagcgagttaatttattcatagtcattgggaaaacttttaatacagccttggatct 417
Query: 2599 tagaaactaaaattaa 2614
||||||||||||||||
Sbjct: 418 tagaaactaaaattaa 433
>BF01044A1D01
Length = 742
Score = 81.8 bits (41), Expect = 5e-15
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 180 tttttttatgctaaggcttcattcgcactggaatccagaaatattctgccaatctcaacg 239
||||||||||||| ||||||||| ||||||||||| | |||||||||||||| ||||||
Sbjct: 179 tttttttatgctatggcttcatttgcactggaatcgtggaatattctgccaatgtcaacg 238
Query: 240 ttttt 244
|||||
Sbjct: 239 ttttt 243
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 417,641
Number of extensions: 34996
Number of successful extensions: 34996
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 34992
Number of HSP's successfully gapped: 2
Length of query: 2614
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 2597
Effective length of database: 8,119,229
Effective search space: 21085637713
Effective search space used: 21085637713
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)