BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN16707 (UTR included)
(2116 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01041B1B02 1455 0.0
>BF01041B1B02
Length = 781
Score = 1455 bits (734), Expect = 0.0
Identities = 771/783 (98%), Gaps = 2/783 (0%)
Strand = Plus / Plus
Query: 608 agacagagacgaagacgacagcaaggactctaccagcgagaaacactacaagctgataga 667
|||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 1 agacagagacgaagacgacagcaaggactcnnccggcgagaaacactacaagctgataga 60
Query: 668 ggaaatcaagaatatattgaaattcaccaacgccataccgttcaagacgaagactacccg 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggaaatcaagaatatattgaaattcaccaacgccataccgttcaagacgaagactacccg 120
Query: 728 ctactactgcgcgtactgttccacggatgggccgatattcgaggacggggactgtctccg 787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ctactactgcgcgtactgttccacggatgggccgatattcgaggacggggactgtctccg 180
Query: 788 gctgcacacgagactggagcacgacaaagagaggttgcggggcgtggagaagttcatgag 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gctgcacacgagactggagcacgacaaagagaggttgcggggcgtggagaagttcatgag 240
Query: 848 gccgcagtggatgaacgaaatcgtcaaactggacatagagggcctgcattgtaccgcatg 907
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gccgcagtggatgaacgaaatcgtcaaactggacatagagggcctgcattgtaccgcatg 300
Query: 908 cagggtgaggctgcccgactggaacaggatgttcgtacacttcgccaacgcgcataacat 967
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 301 cagggtgaggctgcccgactggaacaggatgttcgtacacttcgccaacgcgcataatat 360
Query: 968 agagttcgatcaagcgtacaccagggtgatcccgtacgcgctgacctcacagctgagatg 1027
|||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 361 agagtttgatcaggcgtacaccagagtgatcccgtacgcgctgacctcacagctgagatg 420
Query: 1028 cgtgctgtgcaaagagggcttccacaactacggccacgtggacagccacatgaaccatca 1087
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cgtgctgtgcaaagagagcttccacaactacggccacgtggacagccacatgaaccatca 480
Query: 1088 ctacagcaactatatatgccaccagtgtggcgatacctttttggctgcgagccgtttcga 1147
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 481 ctacagcaactatatatgccaccagtgtggcgatacc--tttggctgcgagccgtttcga 538
Query: 1148 taagcacctcaaggtgcacaagataggcaactatccgtgcgagttgtgcgacaaagtctt 1207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 539 taagcacctcaaggtgcacaagataggcaactatccgtgcgagttgtgcgacaaagtttt 598
Query: 1208 cacgctagaaaagtataggacgaagcataaaaacctggtccacgaccagaagagcatggt 1267
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 cacgctggaaaagtataggacgaagcataaaaacctggtccacgaccagaagagcatggt 658
Query: 1268 gaagtgtctgtattgcagcgagaagtttgtcggcctgttccagaggcacttgcacgtgac 1327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 gaagtgtctgtattgcagcgagaagtttgtcggcctgttccagaggcacttgcacgtgac 718
Query: 1328 cgaacagcataaagacaaggttaaggtgtacacgtgcgagttgtgcggcaactgctacac 1387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 cgaacagcataaagacaaggttaaggtgtacacgtgcgagttgtgcggcaactgctacac 778
Query: 1388 ctg 1390
|||
Sbjct: 779 ctg 781
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 257,036
Number of extensions: 10819
Number of successful extensions: 10819
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 10816
Number of HSP's successfully gapped: 1
Length of query: 2116
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 2099
Effective length of database: 8,119,229
Effective search space: 17042261671
Effective search space used: 17042261671
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)