BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN16780 (UTR included)
(1762 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01035X1B05 688 0.0
BF01017B1A10 115 2e-25
BF01054B2B08 90 1e-17
BF14_736_C1 88 6e-17
BF01052B2H04 78 5e-14
>BF01035X1B05
Length = 770
Score = 688 bits (347), Expect = 0.0
Identities = 371/379 (97%)
Strand = Plus / Plus
Query: 652 taaatgtcccgaacaactacaaaatactatttctatctggcggcggtcagggacaatttg 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 taaatgtcccgaacaactacaaaatactatttctatctggcggcggtcagggacaatttg 225
Query: 712 ctgcggtgccactaaatttaatatcacgtactggttcagccgactatgtagtgactggtg 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 ctgcggtgccactaaatttaatatcacgtactggttcagccgactatgtagtgactggtg 285
Query: 772 cctggtcagcaaaagccgcaaaggaagcgaagaagtacggtaaggtgaatctggtattac 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 286 cctggtcagcaaaagccgcaaaggaagcgaagaagtacggtaaggtgaatctggtgttac 345
Query: 832 cacctactgaccgttacgtggaaatcccagatcagtcaacttggaaactcgaccccaacg 891
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 caccaactgaccgctacgtggaaatcccagatcagtcaacttggaaactcgaccccaacg 405
Query: 892 cttcctacgtccatatttgcaccaatgagacgattcacggaatagaatttgattttatcc 951
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 406 cttcctacgtccatatttgcacaaatgagacgattcacggaatagaatttgattttatcc 465
Query: 952 cggacactaaagttgtcccactggttgctgatatgtcttccaattttatgtccaagaaaa 1011
|||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 cggacactaaaggtgtgcctctggttgctgatatgtcttccaattttatgtccaagaaaa 525
Query: 1012 ttgatgtttctaaagttgg 1030
|||||||||||||| ||||
Sbjct: 526 ttgatgtttctaaatttgg 544
Score = 73.8 bits (37), Expect = 8e-13
Identities = 67/77 (87%)
Strand = Plus / Minus
Query: 314 agcaaaaattggcggtgtgctaagaatggaatccgcttttgaattcgcggtccaatccaa 373
|||||| || ||||||||| ||||||||||||||||||| | ||| ||||||||||||
Sbjct: 710 agcaaacatcggcggtgtgttaagaatggaatccgctttcgcattgatggtccaatccaa 651
Query: 374 tattgatgtgcaaatgg 390
|||||| | ||||||||
Sbjct: 650 tattgaggggcaaatgg 634
>BF01017B1A10
Length = 716
Score = 115 bits (58), Expect = 2e-25
Identities = 131/153 (85%), Gaps = 3/153 (1%)
Strand = Plus / Plus
Query: 1147 ctcttcggaggtccgggtcgcttgatggccggtctccgctctgtctgccgttggacgctt 1206
||||||||||||| |||||||||||||| |||| ||| ||||||||||||| || |||||
Sbjct: 436 ctcttcggaggtctgggtcgcttgatggtcggtttccactctgtctgccgtcgggcgctt 495
Query: 1207 gcactcggcggtgggtagttggagactggccgcgtgggcttgggtgggaggggtaagggg 1266
|| |||||| ||||||| | | || | ||||||||| ||| |||| || ||||||||
Sbjct: 496 gcgctcggcagtgggta--tcca-accgaccgcgtgggtttgagtggaagctgtaagggg 552
Query: 1267 ttaaccctctcgcgattaagcaagcccgccagg 1299
||||||||||||||| |||||||||| ||||||
Sbjct: 553 ttaaccctctcgcgagtaagcaagcctgccagg 585
>BF01054B2B08
Length = 807
Score = 89.7 bits (45), Expect = 1e-17
Identities = 63/69 (91%)
Strand = Plus / Minus
Query: 541 ggggtgggaataaggaaatagcagaaaagggtaggaacagggaaaggacaaccggctctc 600
||||||||||||| || || |||| ||||||| |||||||||||||| ||||||||||||
Sbjct: 767 ggggtgggaataaagagatggcaggaaagggtgggaacagggaaagggcaaccggctctc 708
Query: 601 tcactcatc 609
|||||||||
Sbjct: 707 tcactcatc 699
>BF14_736_C1
Length = 796
Score = 87.7 bits (44), Expect = 6e-17
Identities = 95/112 (84%)
Strand = Plus / Minus
Query: 541 ggggtgggaataaggaaatagcagaaaagggtaggaacagggaaaggacaaccggctctc 600
||||||||||||||||||| |||| ||||||| |||| ||||||| ||||||||||||
Sbjct: 773 ggggtgggaataaggaaatggcaggaaagggtgagaacgcggaaagggcaaccggctctc 714
Query: 601 tcactcatcagacgaattgcagctataaaaggctacttcacgtcaatcttct 652
|||||||| |||||| ||||| | |||| |||||||||| | |||||||
Sbjct: 713 tcactcattggacgaaacgcagccactaaagactacttcacgccgatcttct 662
>BF01052B2H04
Length = 668
Score = 77.8 bits (39), Expect = 5e-14
Identities = 85/99 (85%), Gaps = 1/99 (1%)
Strand = Plus / Plus
Query: 542 gggtgggaataaggaaatagcagaaaagggtaggaacagggaaaggacaaccggctctct 601
|||||||||||||| ||| ||| ||| ||| |||| ||||||||| ||||||| |||||
Sbjct: 286 gggtgggaataagggaatgtcaggaaaaggtgggaatagggaaagggcaaccggttctct 345
Query: 602 cactcatcagacgaattgcagctataaaaggctacttca 640
||||||| |||||||| |||| || |||||||||||||
Sbjct: 346 gactcatcggacgaatt-cagcaattaaaggctacttca 383
Score = 67.9 bits (34), Expect = 5e-11
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 415 taaaggtggcaaacgagcagacggcctacttgatggacagtagtgactgtcgcccataga 474
|||||||||||||||||||||||||||||||| ||| ||| || || ||||||||| ||
Sbjct: 169 taaaggtggcaaacgagcagacggcctacttggtgggcagcagctaccgtcgcccatgga 228
Query: 475 ca 476
||
Sbjct: 229 ca 230
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 195,449
Number of extensions: 3904
Number of successful extensions: 3904
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 3903
Number of HSP's successfully gapped: 8
Length of query: 1762
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1745
Effective length of database: 8,119,229
Effective search space: 14168054605
Effective search space used: 14168054605
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)