BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN16840 (UTR included)
(1747 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01055A2D01 1124 0.0
BF01060A2C04 145 3e-34
>BF01055A2D01
Length = 827
Score = 1124 bits (567), Expect = 0.0
Identities = 579/583 (99%)
Strand = Plus / Plus
Query: 485 agcgacgaaacttgcgatgacgtcactcaattcaagaccttttaccgtcctcgtagaggg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 agcgacgaaacttgcgatgacgtcactcaattcaagaccttttaccgtcctcgtagaggg 204
Query: 545 caatatcggtagtggtaagacaacgtttgtagaacattttaaacaatttgaggatatatc 604
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 caatatcggtagtgggaaaacaacgtttgtagaacattttaaacaatttgaggatatatc 264
Query: 605 gttgctgacggaacctgttgaagaatggcgcaatttacggggatggaaccttttggattt 664
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 265 gttgctgacggaacctgttgaagaatggcgcaatttacggggatggaatcttttggattt 324
Query: 665 aatgtacaaagatcctgcgaaatgggctatgacatttcaatcctacgtagcgatgactat 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aatgtacaaagatcctgcgaaatgggctatgacatttcaatcctacgtagcgatgactat 384
Query: 725 gttagagatgcaccggcgtcctacgtcgactcctgtgaagttgatggagcggtctctata 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gttagagatgcaccggcgtcctacgtcgactcctgtgaagttgatggagcggtctctata 444
Query: 785 cagtgcgcgctattgttttgtggaacatatgagaaaagagggaaccattcatccggcgca 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cagtgcgcgctattgttttgtggaacatatgagaaaagagggaaccattcatccggcgca 504
Query: 845 gtttgcggttttagacgaatggttcaggttcattgaccgagagatacccattgaggtgga 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtttgcggttttagacgaatggttcaggttcattgaccgagagatacccattgaggtgga 564
Query: 905 ccttatagtatatttaagagcaaccccatcggtggtttatgagagaataaggaagagggc 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ccttatagtatatttaagagcaaccccatcggtggtttatgagagaataaggaagagggc 624
Query: 965 taggtcagaggagcaatgtgtaccattgagttatcttgaggctctgcattcattgcatga 1024
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 taggtctgaggagcaatgtgtaccattgagttatcttgaggctctgcattcattgcatga 684
Query: 1025 aaactggcttgtgaaccgcacacatgctgaatgccctgcacct 1067
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aaactggcttgtgaaccgcacacatgctgaatgccctgcacct 727
Score = 274 bits (138), Expect = 4e-73
Identities = 144/146 (98%)
Strand = Plus / Plus
Query: 155 ttaatgtttatggaactttgttaaaattttaatgttatattggtgtaggtacattaaggg 214
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttaatgtttctggaattttgttaaaattttaatgttatattggtgtaggtacattaaggg 60
Query: 215 ttttaaaaaaaattgatggaacactttgaaagctttgtgtgtggatactatgatacttcg 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttttaaaaaaaattgatggaacactttgaaagctttgtgtgtggatactatgatacttcg 120
Query: 275 aaggatcggtattttatatgaaaaag 300
||||||||||||||||||||||||||
Sbjct: 121 aaggatcggtattttatatgaaaaag 146
>BF01060A2C04
Length = 844
Score = 145 bits (73), Expect = 3e-34
Identities = 121/136 (88%), Gaps = 2/136 (1%)
Strand = Plus / Minus
Query: 1068 agcgcgaatgtaaacacgacgctcgcgtttgttgcaaggtcctttgactcatgcccatat 1127
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 362 agcgcgaatgtaaacaccacgctcgcgtttgttgcaaggtcctttgattcatgcccaaat 303
Query: 1128 taccgctccggacgcgagtgctgcgtggcgcgagatgagatgcaaaccacgagcgactat 1187
||||||||||||||||| |||||| ||||||||| |||| || | ||||| | |||
Sbjct: 302 taccgctccggacgcgaccgctgcgaggcgcgagacgagaggcga--ggcgagctaatat 245
Query: 1188 ttacactctcaccttg 1203
||||||||||||||||
Sbjct: 244 ttacactctcaccttg 229
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 213,349
Number of extensions: 4468
Number of successful extensions: 4468
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 4468
Number of HSP's successfully gapped: 3
Length of query: 1747
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1730
Effective length of database: 8,119,229
Effective search space: 14046266170
Effective search space used: 14046266170
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)