BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN16842 (UTR included)
(1237 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01031A1B09 1275 0.0
>BF01031A1B09
Length = 713
Score = 1275 bits (643), Expect = 0.0
Identities = 662/667 (99%), Gaps = 1/667 (0%)
Strand = Plus / Plus
Query: 105 atatttgatcagtttggagtccgtaattcattttagttaaattatttcttcactttgttt 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 atatttgatcagtttggagtccgtaattcattttagttaaattatttcttcactttgttt 70
Query: 165 ttttttgaattccgagttattcctcaacttttacactatacaacatacgaaatgtgcaaa 224
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 t-ttttgaattccgagttattcctcaacttttacactatacaacatacgaaatgtgcaaa 129
Query: 225 tttggtgtattctctttaatattgttagtagctacgctacaaacttcgttcggattaaaa 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 tttggtgtattctctttaatattgttagtagctacgctacaaacttcgttcggattaaaa 189
Query: 285 gaaggcgaatgtgaagtatgtgtaaaaactgtagataagtttgcagccacgttatcagat 344
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 190 gaaggcgaatgtgaagtatgtgtaaaaactgtagataagtttgcaaccacgttatcagat 249
Query: 345 gatgtgaaaaaagaccctaaaaaaatcgaattagaatttaagaaattttgtaaaggaagc 404
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 250 gatgtgaaaaaagaccctaaaaaaattgaattagaatttaagaaattttgtaaaggaagc 309
Query: 405 aagaataaggagaatcgattttgctattacttgggagggttagaagaatcggcaaccggt 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 aagaataaggagaatcgattttgctattacttgggagggttagaagaatcggcaaccggt 369
Query: 465 atattgggtgaactctcgaaacctctgagctggtccatgccttctgataaaatatgtgag 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 atattgggtgaactctcgaaacctctgagctggtccatgccttctgataaaatatgtgag 429
Query: 525 aaacttaggaaaaaagatgctcagatttgcgatcttcgtttcgataagcaaattgactta 584
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 430 aaacttaggaaaaaagatgctcagatttgcgatcttcgttttgataagcaaattgactta 489
Query: 585 aacaatgtagaccttaagaaacttaaagtaagagatttaaagaagattttaaacgactgg 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 aacaatgtagaccttaagaaacttaaagtaagagatttaaagaagattttaaacgactgg 549
Query: 645 gacgaggtttgcgacggttgtatcgaaaagacggatttcattaagagaatagaagaatta 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 gacgaggtttgcgacggttgtatcgaaaagacggatttcattaagagaatagaagaatta 609
Query: 705 aaacctaagtacatgggaagatctgatttgtaataaaactcaattaataggtaatagatc 764
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 aaacccaagtacatgggaagatctgatttgtaataaaactcaattaataggtaatagatc 669
Query: 765 taggtat 771
|||||||
Sbjct: 670 taggtat 676
Score = 81.8 bits (41), Expect = 2e-15
Identities = 41/41 (100%)
Strand = Plus / Plus
Query: 893 aggtattttttggacttgtgatacactgcagtgttttgtcg 933
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 aggtattttttggacttgtgatacactgcagtgttttgtcg 711
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 187,039
Number of extensions: 3619
Number of successful extensions: 3619
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 3618
Number of HSP's successfully gapped: 2
Length of query: 1237
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1220
Effective length of database: 8,119,229
Effective search space: 9905459380
Effective search space used: 9905459380
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)