BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN17077 (UTR included)
(3139 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01055B1F08 1273 0.0
>BF01055B1F08
Length = 802
Score = 1273 bits (642), Expect = 0.0
Identities = 669/677 (98%), Gaps = 2/677 (0%)
Strand = Plus / Plus
Query: 2465 acagttcaactatatactcgttgtgggcgagcgagagaagtcctccaacacagtgaatgt 2524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acagttcaactatatactcgttgtgggcgagcgagagaagtcctccaacacagtgaatgt 60
Query: 2525 ccgtacaagagataacaaagtccacggagaaatgtccatcgagggtctgatagagcacct 2584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ccgtacaagagataacaaagtccacggagaaatgtccatcgagggtctgatagagcacct 120
Query: 2585 caacaagctggtcgctgagaaaacgctctccgaggacagtgagctgctcaaatagattgt 2644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 caacaagctggtcgctgagaaaacgctctccgaggacagtgagctgctcaaatagattgt 180
Query: 2645 ctccgagggaacacgctgactatgttctggcgacatacatacgcctgcatgtgaccgtct 2704
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 181 ctccgagggaacacgctgactatgttctggcgacatacatacgtctgcatgtgaccgtct 240
Query: 2705 cagaaactatattccgttaagtacttacacacatgcggtacttttaatgcaa--tttttt 2762
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 241 cagaaactatattccgttaagtacttacacacatgcggtacttttaatgcaaattttttt 300
Query: 2763 ttacatgtatgtgagcttagttctcttcggttccggggcccgcttttgtttctctagtag 2822
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttacatgcatgtgagcttagttctcttcggttccggggcccgcttttgtttctctagtag 360
Query: 2823 ctagtgcattagtgtagtgcggttcgctcgtcgtctccagcgtattaatttatttcagac 2882
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ctagtacattagtgtagtgcggttcgctcgtcgtctccagcgtattaatttatttcagac 420
Query: 2883 ttatgctatttatattttcattcatccgttcccgccgtcgcggcgtcgcggacggtgggt 2942
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ttatgctatttatattttcatccatccgttcccgccgtcgcggcgtcgcggacggtgggt 480
Query: 2943 ttgtcatttctacctgtttaatttattaaaaggtgtaatattttttcttttcctcatctt 3002
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttgtcatttctacctgtttaatttattaaaaggtgtaatattttttcttttcctcatctt 540
Query: 3003 agttgtaaatggagcgatcaaattgctccctcatcatgagcgcgacgtgtccttggactc 3062
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 agttgtaaatggagcgatcaaattgctccctcatcatgagcgcgacgtgtccttggactc 600
Query: 3063 taaaacatttagaactaaatgaaaattcgtttgtcgtgtgatttgtgatagttataagtc 3122
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 601 taaaacatttagaactaaatgaaaattcgtttgtcgtgtgatttgtgatagatataagtc 660
Query: 3123 cgttcattactccgcac 3139
| |||||||||||||||
Sbjct: 661 ccttcattactccgcac 677
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 313,823
Number of extensions: 6356
Number of successful extensions: 6356
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 6355
Number of HSP's successfully gapped: 1
Length of query: 3139
Length of database: 8,280,457
Length adjustment: 18
Effective length of query: 3121
Effective length of database: 8,109,745
Effective search space: 25310514145
Effective search space used: 25310514145
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)