BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN17227 (UTR included)
(1312 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01034A2A04 212 1e-54
BF14_335_C2 119 1e-26
BF01043B1E03 100 1e-20
>BF01034A2A04
Length = 789
Score = 212 bits (107), Expect = 1e-54
Identities = 107/107 (100%)
Strand = Plus / Plus
Query: 732 ggtgagggtctgcacaaccttcacaggacgaggagtcgcggcgacagtatgaacactgtt 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ggtgagggtctgcacaaccttcacaggacgaggagtcgcggcgacagtatgaacactgtt 627
Query: 792 ggcaagacacgcgccaaatagacacacacacatacacacaacccaca 838
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ggcaagacacgcgccaaatagacacacacacatacacacaacccaca 674
>BF14_335_C2
Length = 1827
Score = 119 bits (60), Expect = 1e-26
Identities = 136/160 (85%), Gaps = 6/160 (3%)
Strand = Plus / Minus
Query: 581 gagaggtataacggctaaatctctctacaacctactgaaagacttgggcctgtccagagc 640
|||||||||||| |||||||||||||||| |||||| ||| ||||||||||||||||| |
Sbjct: 1107 gagaggtataacagctaaatctctctacagcctactaaaatacttgggcctgtccagaac 1048
Query: 641 tcacatcaattcgttcttggaacgta---cgaaggcagccctagtaggttcttttcaaat 697
| ||| || ||| ||||| ||||||| ||||| |||| ||||||||||| ||||||||
Sbjct: 1047 taacaccagttcattcttcgaacgtacttcgaagacagctctagtaggttcgtttcaaat 988
Query: 698 atggttaaatagggagaggagctcggacagtggaggtgag 737
|||||| | |||||||||| |||| |||||||||||
Sbjct: 987 ttggtta---ggagagaggagcttggacggtggaggtgag 951
>BF01043B1E03
Length = 830
Score = 99.6 bits (50), Expect = 1e-20
Identities = 132/158 (83%), Gaps = 6/158 (3%)
Strand = Plus / Plus
Query: 583 gaggtataacggctaaatctctctacaacctactgaaagacttgggcctgtccagagctc 642
|||||||||| ||| |||||||||||||||||||||| ||||| ||||| ||||| ||
Sbjct: 213 gaggtataacagcttcatctctctacaacctactgaaacacttgagcctgcccagaacta 272
Query: 643 acatcaattcgttcttggaacgta---cgaaggcagccctagtaggttcttttcaaatat 699
||||||| || ||||||||||||| | ||||||| || |||||| |||||||| |
Sbjct: 273 acatcaaatcattcttggaacgtactgcaaaggcaggcc---taggtttgtttcaaattt 329
Query: 700 ggttaaatagggagaggagctcggacagtggaggtgag 737
||||| ||| ||||||| || ||||||||||||||||
Sbjct: 330 ggttaggtagagagaggaccttggacagtggaggtgag 367
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 222,125
Number of extensions: 17202
Number of successful extensions: 17202
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 17201
Number of HSP's successfully gapped: 3
Length of query: 1312
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1295
Effective length of database: 8,119,229
Effective search space: 10514401555
Effective search space used: 10514401555
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)