BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN17257 (UTR included)
(1597 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01057A2C01 1082 0.0
>BF01057A2C01
Length = 743
Score = 1082 bits (546), Expect = 0.0
Identities = 549/550 (99%)
Strand = Plus / Plus
Query: 404 agatcatgcacgtatcatcatagttccttcttcgatttaagtgtttgtgttctgtgaaca 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 agatcatgcacgtatcatcatagttccttcttcgatttaagtgtttgtgttctgtgaaca 253
Query: 464 ttgtgttaagtgtcagtgacagtgttgtagtgttgtgatggatcccggatcgccttcttt 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 ttgtgttaagtgtcagtgacagtgttgtagtgttgtgatggatcccggatcgccttcttt 313
Query: 524 attatggccgttgcgcctgagcaaaccagcggtgactgtaccggtgcctgtcaacgaaga 583
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 314 attatggccgttgcgcctgagcaaaccagtggtgactgtaccggtgcctgtcaacgaaga 373
Query: 584 aaacaacaaagccgaggacagggcacagtctccgtctttagctgaccgcctgtctgcagc 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 aaacaacaaagccgaggacagggcacagtctccgtctttagctgaccgcctgtctgcagc 433
Query: 644 tccttcgccatccagcccagcacccccgagtccctcgccaccgcaacaccaattccaagc 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tccttcgccatccagcccagcacccccgagtccctcgccaccgcaacaccaattccaagc 493
Query: 704 ggccctggtagcagagaagtacctcctgctagaacaagtggaaggttcttcattatgccg 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ggccctggtagcagagaagtacctcctgctagaacaagtggaaggttcttcattatgccg 553
Query: 764 gtgtgtggacgtgcgcacgcacgaggaatacgtttgcaaagtagtatcaagagattgcag 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gtgtgtggacgtgcgcacgcacgaggaatacgtttgcaaagtagtatcaagagattgcag 613
Query: 824 tagtctcctccaagcgcactaccgtttggatgggcatcctcacgtgaatcctatccacga 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 tagtctcctccaagcgcactaccgtttggatgggcatcctcacgtgaatcctatccacga 673
Query: 884 ggtgttggttggtgataaaagggtgtacctcatcttccctcgctcgcactcagatctcca 943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 ggtgttggttggtgataaaagggtgtacctcatcttccctcgctcgcactcagatctcca 733
Query: 944 ctcgtatgtc 953
||||||||||
Sbjct: 734 ctcgtatgtc 743
Score = 359 bits (181), Expect = 9e-99
Identities = 184/185 (99%)
Strand = Plus / Plus
Query: 51 aggtggttgtgtgtctgtttagtttcattccaacccgagcggacaccggcccaaaatatt 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 aggtggttgtgtgtctgtttagtttcattccaacccgagcggacaccggcccaaaatatt 70
Query: 111 ggcctgtctatactcgttcgaattactccgatttaattcaagtaattcagtgttagtaag 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 ggcctgtctatactcgttcgaattactccgatttaattcaagtaattcagtgttagtaag 130
Query: 171 cgaatttcgccactacggacagtcaaattttggtacgatatcctctcagggcgaatcatt 230
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 131 cgaatttcgccactacggacagtcaaattttggtacgatatcctctcagggagaatcatt 190
Query: 231 tcaag 235
|||||
Sbjct: 191 tcaag 195
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 166,439
Number of extensions: 3819
Number of successful extensions: 3819
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 3819
Number of HSP's successfully gapped: 2
Length of query: 1597
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1580
Effective length of database: 8,119,229
Effective search space: 12828381820
Effective search space used: 12828381820
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)