BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN17297 (UTR included)
(2035 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF14_486_C1 472 e-132
BF01050B1G09 100 2e-20
BF01037B1H08 82 4e-15
BF01029B1B06 78 6e-14
>BF14_486_C1
Length = 3127
Score = 472 bits (238), Expect = e-132
Identities = 341/377 (90%), Gaps = 20/377 (5%)
Strand = Plus / Plus
Query: 1563 tatcggcgctatcagcttcaatgacggatgcaacatgaaaataactta----aattatta 1618
||||||||| | ||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 2664 tatcggcgcaagcagcttcaacgacggatgcaacatgaaaataactggcaccaattatta 2723
Query: 1619 taacaccttattggtcgtcgttactattgttaaaagtaaaacgaaatcaaagagaataga 1678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2724 taacaccttattggtcgtcgttactattgttaaaagtaaaacgaaatcaaagagaataga 2783
Query: 1679 actatgtttgaattctggcataaatatgacgtctggacgcacgacagcggactgcagagt 1738
|||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||
Sbjct: 2784 actatgtttgaattctggtttaaatatgacgtctggacgcacgacaggggacggcagagt 2843
Query: 1739 tcagcgagtgcggaacataaagaatgtgattatgaagaaccttcgagaaatacaagaaca 1798
|||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 2844 tcagcgagtgcggagcata---------------aagaaccttcgagaaatacaagaaca 2888
Query: 1799 tttagaagaattgaagtttcattttaaaatatctggaacgtactgaaacaagtgacatta 1858
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2889 tctagaagaattgaagtttcattttaaaatatctggaacgtactgaaacaagtgacatta 2948
Query: 1859 gtgacgtcagcgaggctggcgtcctctctttaaaataatgaatttgt-attaaatccgat 1917
| |||| |||||||||||||||||| ||||||||||||||||||| | || |||||||||
Sbjct: 2949 gagacgccagcgaggctggcgtcctgtctttaaaataatgaatttataataaaatccgat 3008
Query: 1918 atatatatatatatata 1934
|||||||||||||||||
Sbjct: 3009 atatatatatatatata 3025
>BF01050B1G09
Length = 763
Score = 99.6 bits (50), Expect = 2e-20
Identities = 53/54 (98%)
Strand = Plus / Plus
Query: 1440 atcagcaagcggtactggccggatgctctcaccaaccagcagttcacagctggt 1493
|||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 atcagcaagcggtactggccggatgctctctccaaccagcagttcacagctggt 54
>BF01037B1H08
Length = 758
Score = 81.8 bits (41), Expect = 4e-15
Identities = 50/53 (94%)
Strand = Plus / Plus
Query: 931 aggcgcgggttcgaaacctggcgagtacctatgtgatctgttccgagtcatat 983
|||||||||||||||||||||| |||||| ||||||||| |||||||||||||
Sbjct: 114 aggcgcgggttcgaaacctggcaagtaccaatgtgatcttttccgagtcatat 166
>BF01029B1B06
Length = 765
Score = 77.8 bits (39), Expect = 6e-14
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 185 tagttctattctcctttaaaacagtctttcatttcgtttaacttttaacaataatgatga 244
|||||||||||||||||||| ||||| | ||||||||| |||||||||||||| ||||
Sbjct: 600 tagttctattctcctttaaactagtctctgatttcgtttgacttttaacaataactatga 659
Query: 245 ataccagtaag 255
| |||||||||
Sbjct: 660 acaccagtaag 670
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 241,923
Number of extensions: 12205
Number of successful extensions: 12205
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 12201
Number of HSP's successfully gapped: 6
Length of query: 2035
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 2018
Effective length of database: 8,119,229
Effective search space: 16384604122
Effective search space used: 16384604122
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)