BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN17400 (UTR included)
(2203 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01025B1H12 1066 0.0
BF01025B1F03 428 e-119
>BF01025B1H12
Length = 724
Score = 1066 bits (538), Expect = 0.0
Identities = 555/558 (99%), Gaps = 2/558 (0%)
Strand = Plus / Minus
Query: 1631 caggtcggccttgctacaggaacttgaacgtagaagactggccaaatcgtgccacactca 1690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 caggtcggccttgctacaggaacttgaacgtagaagactggccaaatcgtgccacactca 498
Query: 1691 ctcaaattattgattataacagtgtaatgccttatgaaactgtgattttaacataagttt 1750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ctcaaattattgattataacagtgtaatgccttatgaaactgtgattttaacataagttt 438
Query: 1751 tttttataatattgtacataagtatgctatgtatatattatcgttcctaaatgtcataag 1810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tttttataatattgtacataagtatgctatgtatatattatcgttcctaaatgtcataag 378
Query: 1811 tgccttattagttgccttgacagtattatatatattttttggctttatcatcacatatgt 1870
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 377 tgccttattagttgccttgacagtattatatatattttt-ggctttatcatcacatatgt 319
Query: 1871 gaataaattttaattatttttataccctttatacaattgtgcggg-atgcttctattaaa 1929
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 318 gaataaattttaattatttttataccctttatacaattgtgcggggatgcttctattaaa 259
Query: 1930 gtattcttacttccctatacctgtcatagtataaggcgagtatattatacaacattataa 1989
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gtattcttacttccctatacctgtcatagtataaggcgagtatattatacaacattataa 199
Query: 1990 taaaatcacttagttaaagttcagaaactgttattttaagcttatgtctacaacaaaatc 2049
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 taaaatcacttagttaaagttcagaaactgttattttaagcttatgtctacaacaaaatc 139
Query: 2050 aacagataaataaattatgtttccaattcttcactgtttatttcttttttatcaattgtt 2109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 aacagataaataaattatgtttccaattcttcactgtttatttcttttttatcaattgtt 79
Query: 2110 tttttctctccttccacgatatcatattcatcaactttagtcagtccagatattctgtaa 2169
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78 tttttctctccttccacaatatcatattcatcaactttagtcagtccagatattctgtaa 19
Query: 2170 actttagcatttttgata 2187
||||||||||||||||||
Sbjct: 18 actttagcatttttgata 1
>BF01025B1F03
Length = 281
Score = 428 bits (216), Expect = e-119
Identities = 225/228 (98%)
Strand = Plus / Plus
Query: 1617 aaatacgaacagtacaggtcggccttgctacaggaacttgaacgtagaagactggccaaa 1676
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 11 aaatacgaacagtacaggtcggccctgctacaggaacttgaacgtagaagactggccaaa 70
Query: 1677 tcgtgccacactcactcaaattattgattataacagtgtaatgccttatgaaactgtgat 1736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 tcgtgccacactcactcaaattattgattataacagtgtaatgccttatgaaactgtgat 130
Query: 1737 tttaacataagttttttttataatattgtacataagtatgctatgtatatattatcgttc 1796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 tttaacataagttttttttataatattgtacataagtatgctatgtatatattatcgttc 190
Query: 1797 ctaaatgtcataagtgccttattagttgccttgacagtattatatata 1844
||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 191 ctaaatgtcataagtgccttattagatgccttgaaagtattatatata 238
Score = 81.8 bits (41), Expect = 4e-15
Identities = 41/41 (100%)
Strand = Plus / Minus
Query: 1748 ttttttttataatattgtacataagtatgctatgtatatat 1788
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ttttttttataatattgtacataagtatgctatgtatatat 232
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 313,635
Number of extensions: 7813
Number of successful extensions: 7813
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 7811
Number of HSP's successfully gapped: 3
Length of query: 2203
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 2186
Effective length of database: 8,119,229
Effective search space: 17748634594
Effective search space used: 17748634594
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)