BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN17440 (UTR included)
(1330 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF14_438_C1 543 e-154
BF01032B1D07 482 e-136
BF01046B2H10 92 3e-18
>BF14_438_C1
Length = 622
Score = 543 bits (274), Expect = e-154
Identities = 277/278 (99%)
Strand = Plus / Plus
Query: 326 gttcaatcatataggatgtataggaaggattctctctaataatgacgccttgttatattg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gttcaatcatataggatgtataggaaggattctctctaataatgacgccttgttatattg 60
Query: 386 ttgggataaaaaaaaataagggcaatgttagatttttcgtgttttcttattaagttattt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttgggataaaaaaaaataagggcaatgttagatttttcgtgttttcttattaagttattt 120
Query: 446 aaaaaaaaatgcatcatttaactaaaaattaccttgaaatgcccccatcttcaacatgaa 505
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaaaaaaaatgcatcatttaaataaaaattaccttgaaatgcccccatcttcaacatgaa 180
Query: 506 aacattttttgttaaaatttatacaaaaagaaagataacaaaccagaaaaaagtaatgta 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aacattttttgttaaaatttatacaaaaagaaagataacaaaccagaaaaaagtaatgta 240
Query: 566 tcaggaagtttttatcagatatagtgagttgttcaaat 603
||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tcaggaagtttttatcagatatagtgagttgttcaaat 278
>BF01032B1D07
Length = 609
Score = 482 bits (243), Expect = e-136
Identities = 246/247 (99%)
Strand = Plus / Plus
Query: 250 gttgacaagtggcactacttgtcgagtctctaaccatcgtcctcgtccagggtcaactct 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 gttgacaagtggcactacttgtcgagtctctaaccatcgtcctcgtccagggtcaactct 402
Query: 310 tcgtcggtcgcttgtggttcaatcatataggatgtataggaaggattctctctaataatg 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tcgtcggtcgcttgtggttcaatcatataggatgtataggaaggattctctctaataatg 462
Query: 370 acgccttgttatattgttgggataaaaaaaaataagggcaatgttagatttttcgtgttt 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 acgccttgttatattgttgggataaaaaaaaataagggcaatgttagatttttcgtgttt 522
Query: 430 tcttattaagttatttaaaaaaaaatgcatcatttaactaaaaattaccttgaaatgccc 489
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 523 tcttattaagttatttaaaaaaaaatgcatcatttaaataaaaattaccttgaaatgccc 582
Query: 490 ccatctt 496
|||||||
Sbjct: 583 ccatctt 589
Score = 190 bits (96), Expect = 4e-48
Identities = 99/100 (99%)
Strand = Plus / Plus
Query: 1 tcggtcgcgaacagcgcggcgcgcgtggagcgcggggaggcggcgcgagtgttggccgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tcggtcgcgaacagcgcggcgcgcgtggagcgcggggaggcggcgcgagtgttggccgga 303
Query: 61 gctccgccggcagctctacctcaggacataccagccagcg 100
||||||||||||||||| ||||||||||||||||||||||
Sbjct: 304 gctccgccggcagctctgcctcaggacataccagccagcg 343
>BF01046B2H10
Length = 546
Score = 91.7 bits (46), Expect = 3e-18
Identities = 118/142 (83%)
Strand = Plus / Minus
Query: 462 tttaactaaaaattaccttgaaatgcccccatcttcaacatgaaaacattttttgttaaa 521
|||||||||||||| ||| |||| |||||| | ||||||| |||||||||||||||||||
Sbjct: 512 tttaactaaaaattccctggaaaggccccctttttcaacaggaaaacattttttgttaaa 453
Query: 522 atttatacaaaaagaaagataacaaaccagaaaaaagtaatgtatcaggaagtttttatc 581
||| | ||||||||| | | | | || |||||||||||||| || ||| |||||| ||
Sbjct: 452 ttttttccaaaaagaaggttccccaccccgaaaaaagtaatgtttcgggaggtttttttc 393
Query: 582 agatatagtgagttgttcaaat 603
|| |||| | |||||||||||
Sbjct: 392 cgaaatagggggttgttcaaat 371
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 189,320
Number of extensions: 4306
Number of successful extensions: 4306
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 4305
Number of HSP's successfully gapped: 4
Length of query: 1330
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1313
Effective length of database: 8,119,229
Effective search space: 10660547677
Effective search space used: 10660547677
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)