BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN17659 (UTR included)
(2425 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01061B1E04 1275 0.0
>BF01061B1E04
Length = 837
Score = 1275 bits (643), Expect = 0.0
Identities = 705/723 (97%), Gaps = 7/723 (0%)
Strand = Plus / Plus
Query: 1709 tctgacttacctccgacgtgacggttcaactcacctcatcacaccgtcatcctccagcga 1768
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tctgacctacctccgacgtgacggttcaactcacctcatcacaccgtcatcctccagcga 60
Query: 1769 tactctcagctctgcgaatggcgattcatctggcagttcgagggaattgttttcagtaca 1828
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 61 tactctcagctctgcgaatggcgattcatctggcagttcaagggaattgttttcagtaca 120
Query: 1829 aaagctaacagaaaaattcgcatcagtggccttcaagacgggcagagattgtgttgaaaa 1888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaagctaacagaaaaattcgcatcagtggccttcaagacgggcagagattgtgttgaaaa 180
Query: 1889 caacgcgtttgaggccatcggtgatgaggagctataagggtttgaaatattctcccaaag 1948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 caacgcgtttgaggccatcggtgatgaggagctataagggtttgaaatattctcccaaag 240
Query: 1949 aacgaccagcaatgaaaatgtagttgatgccaatactgtacagaatttattttatactta 2008
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aacgaacggcaatgaaaatgtagttgatgccaatactgtacagaatttattttatactta 300
Query: 2009 tgaagtat-ccccgaatttctttt-----tttttttgtgtacataaactttattaagcgg 2062
|||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 301 tgaagtatcccccgaatttcttttttttctttttttgtgtacataaattttattaagcgg 360
Query: 2063 ttataataatgagatgtttattttaatttggctatgaatacattgagccatatgcttgcc 2122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttataataatgagatgtttattttaatttggctatgaatacattgagccatatgcttgcc 420
Query: 2123 atatcttgatttatttatacttctaacaaaacatgaatatgattaagaatattttgttct 2182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 atatcttgatttatttatacttctaacaaaacatgaatatgattaagaatattttgttct 480
Query: 2183 tcaatttttattttcctaaataaaaacagtacattaataagtataccatatatgtaatgt 2242
|||| ||||||||| | ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 481 tcaa-ttttattttatttaataaaaacagtacattaataagtatatcatatatgtaatgt 539
Query: 2243 taagtgttgaccgacaacagaataaaaaagataaatattcatataaaatcaatgtatttt 2302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 taagtgttgaccgacaacagaataaaaaagataaatattcatataaaatcaatgtatttt 599
Query: 2303 aatggtcttaataggtaattaatttacaaaatcctataattggtaaattaggactaaatc 2362
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 aatggtcttagtaggtaattaatttacaaaatcctataattggtaaattaggactaaatc 659
Query: 2363 aaagtccattcttgataaatactggttctcaatattcacaaatgtctcaagttgtccaaa 2422
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 660 aaagtccattcttgataaatactggtactcaatattcacaaatgtctcaagttgtccaaa 719
Query: 2423 gag 2425
|||
Sbjct: 720 gag 722
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 327,637
Number of extensions: 7802
Number of successful extensions: 7802
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 7799
Number of HSP's successfully gapped: 1
Length of query: 2425
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 2408
Effective length of database: 8,119,229
Effective search space: 19551103432
Effective search space used: 19551103432
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)