BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN17778 (UTR included)
(5596 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01039B2B12 1392 0.0
BF14_1279_C1 125 8e-28
>BF01039B2B12
Length = 791
Score = 1392 bits (702), Expect = 0.0
Identities = 762/783 (97%)
Strand = Plus / Plus
Query: 4352 tcctcgtgtggcggtggtgtcgcgaggagtaggaggtcgcgctgccttctcatgtccccc 4411
|||||| || ||||||||||| |||||||||||||||| |||||||||||||||||| ||
Sbjct: 9 tcctcgcgtagcggtggtgtcacgaggagtaggaggtctcgctgccttctcatgtcctcc 68
Query: 4412 agggtacgcgctttccggaccgacggagaccgtgtgtctaccagctgccgactgggccag 4471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 agggtacgcgctttccggaccgacggagaccgtgtgtctaccagctgccgactgggccag 128
Query: 4472 gccgtttcctatctgtaaagaggtgtcgtgtccgtcgcttcctcccccggcgtcgggata 4531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 129 gccgtttcctatctgtaaagaggtgtcgtgtccgtcgcttcctcccccggcgtcgggtta 188
Query: 4532 cgtgctggggcgagcgccctaccgagccggcgacgtactgcagttccactgtaaccctga 4591
|||||| |||||||||||||||||||| |||||||| ||||||||||||||||| |||||
Sbjct: 189 cgtgctcgggcgagcgccctaccgagctggcgacgtgctgcagttccactgtaatcctga 248
Query: 4592 acacacgctccacggacgaccgatactggtctgtcaggacagtggacgttggagtgataa 4651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 acacacgctccacggacgaccgatactggtctgtcaggacagtggacgttggagtgataa 308
Query: 4652 acctcctacttgtgctcaagcctgcacgtaccccggcacaaccatctccggtcgcatgtc 4711
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcctccgacttgtgctcaagcctgcacgtaccccggcacaaccatctccggtcgcatgtc 368
Query: 4712 gtcagttaaattctactacaagatcggggagacggtgtccttcacctgcgagcccggcta 4771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gtcagttaaattctactacaagatcggggagacggtgtccttcacctgcgagcccggcta 428
Query: 4772 caggctgaagggtgctcctatgttgagatgtctcaaaaaccggaaatggtcgaacgcaat 4831
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 429 caggctgaagggtgctcctatgttaagatgtctcaaaaaccggaaatggtcaaacgcaat 488
Query: 4832 ccctctgtgcactcccatcagtaactacacagcctcggattcggtgttgaacgcggatat 4891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ccctctgtgcactcccatcagtaactacacagcctcggattcggtgttgaacgcggatat 548
Query: 4892 cgacgctatgttgtcggacgaggcttaccttccgcgggacatcctgaagcgacgggagtc 4951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 cgacgctatgttgtcggacgaggcttaccttccgcgggacatcctgaagcgacgggagtc 608
Query: 4952 tccggcagtactgtcccctgagagctataaggccgccatgaccagggtcgcggcttccaa 5011
|||||| |||||||||||||||||||| |||||||||||||||| | |||||||||||
Sbjct: 609 tccggcggtactgtcccctgagagctacaaggccgccatgaccannntggcggcttccaa 668
Query: 5012 gatgttgtggcgctcgtccatcgagacctacaagaacagagtgttcagagtcaacagatt 5071
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 gatgttgtggcgctcgtccatcgagacctacaagaacagagtgttcagagtcaacagatt 728
Query: 5072 cattagacgagacactaacagataattacattccacccgtcgggcatagtgaaaacatgt 5131
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 729 cattagacgagacactaacagataattacattccacccgtcggacatagtgaaaacatgt 788
Query: 5132 cta 5134
|||
Sbjct: 789 cta 791
>BF14_1279_C1
Length = 1059
Score = 125 bits (63), Expect = 8e-28
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 1 gaatctttctgaatttcaaaattaaatggccatggtaacgaatacaatgactactttaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 997 gaatctttctgaatttcaaaattaaatggccatggtaacgaatacaatgactactttaac 1056
Query: 61 tgc 63
|||
Sbjct: 1057 tgc 1059
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 482,327
Number of extensions: 7972
Number of successful extensions: 7972
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 7972
Number of HSP's successfully gapped: 2
Length of query: 5596
Length of database: 8,280,457
Length adjustment: 18
Effective length of query: 5578
Effective length of database: 8,109,745
Effective search space: 45236157610
Effective search space used: 45236157610
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 35 (69.9 bits)