BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN17843 (UTR included)
(5743 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01041A1B11 1473 0.0
>BF01041A1B11
Length = 753
Score = 1473 bits (743), Expect = 0.0
Identities = 750/753 (99%)
Strand = Plus / Plus
Query: 2549 aaatatgccctcgacctcgcgaacttttattaagacggagctgctgagtcccacagaaag 2608
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1 aaatatgccctcgacctcgcgaacttttattnngacggagctgctgagtcccacagaaag 60
Query: 2609 ggaaagggagagggagatatcgtccgaattgaaaaaagaaagacacagacacagagatga 2668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggaaagggagagggagatatcgtccgaattgaaaaaagaaagacacagacacagagatga 120
Query: 2669 cgcttcgggcgagagaaggagaaagagaagtacagataaagaagagagattacgacacaa 2728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cgcttcgggcgagagaaggagaaagagaagtacagataaagaagagagattacgacacaa 180
Query: 2729 gttggaaaagatgcgtcgacacaaaagggagagaaaggacaccgacaaatctgaaggtgg 2788
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gttggaaaagatgcgccgacacaaaagggagagaaaggacaccgacaaatctgaaggtgg 240
Query: 2789 cgagttggaggcgagtttacggcgagtgacggcatgttcctgtgggatggtgaattgttc 2848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cgagttggaggcgagtttacggcgagtgacggcatgttcctgtgggatggtgaattgttc 300
Query: 2849 ccacacgtcgagcgtcccgtccgcgcaggcgctggtgaacgccatggagaaagatatgag 2908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccacacgtcgagcgtcccgtccgcgcaggcgctggtgaacgccatggagaaagatatgag 360
Query: 2909 ggaacgtctacaagacctgcagcggcagtgtgacgagaagcgcgctcagctggacgccct 2968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaacgtctacaagacctgcagcggcagtgtgacgagaagcgcgctcagctggacgccct 420
Query: 2969 tactccgccactgccggcgctcgtcacgcccgcaccgtgcctacagctcagtgcgagtcc 3028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tactccgccactgccggcgctcgtcacgcccgcaccgtgcctacagctcagtgcgagtcc 480
Query: 3029 agctctctcaccggactccgatagaggctcatccaagaaacgtaaagtgggaagaccgag 3088
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 agctctctcaccggactccgatagaggctcatccaagaaacgtaaagtgggaagaccgag 540
Query: 3089 gaaagtctccagtcccgactccacggaaaccatcgtagccaagaaaccgaagtcgaaaaa 3148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaaagtctccagtcccgactccacggaaaccatcgtagccaagaaaccgaagtcgaaaaa 600
Query: 3149 cactctcgtcggttacttactggcgaaaggaaaacttaaagggaacatattgtactcaaa 3208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 cactctcgtcggttacttactggcgaaaggaaaacttaaagggaacatattgtactcaaa 660
Query: 3209 gggcgaaccctcgagagacgacgggagtagaactagtaaggtccggccgaaactaaaagc 3268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 gggcgaaccctcgagagacgacgggagtagaactagtaaggtccggccgaaactaaaagc 720
Query: 3269 ggagcctgtcgtgaagatgtactccgaggaaga 3301
|||||||||||||||||||||||||||||||||
Sbjct: 721 ggagcctgtcgtgaagatgtactccgaggaaga 753
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 498,775
Number of extensions: 11229
Number of successful extensions: 11229
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 11229
Number of HSP's successfully gapped: 1
Length of query: 5743
Length of database: 8,280,457
Length adjustment: 18
Effective length of query: 5725
Effective length of database: 8,109,745
Effective search space: 46428290125
Effective search space used: 46428290125
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 35 (69.9 bits)