BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN17881 (UTR included)
(2779 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01049A2B06 1203 0.0
BF01055A1H12 192 2e-48
BF14_2249_C1 135 4e-31
BF01062A1H02 82 5e-15
>BF01049A2B06
Length = 808
Score = 1203 bits (607), Expect = 0.0
Identities = 634/643 (98%)
Strand = Plus / Plus
Query: 1781 aacaactcaaaacaactggcgaagagaggcaaatacatacagtcagggagagtggagcaa 1840
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 166 aacaactcaaaacaactggcgaagagaggcaaatacgtacagtcagggagagtggagcaa 225
Query: 1841 cacacagagacagaagcctatcgggatgccatctatgccgtacccgtgtttcggcgcctc 1900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 cacacagagacagaagcctatcgggatgccatctatgccgtacccgtgtttcggcgcctc 285
Query: 1901 gccccctcgcccgcaccagccccaaagcttccccaaacacttaccggacgtcagccaagg 1960
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 286 gccccctcgccctcaccagccccaaagcttccccaaacacttgccggacgtcagccaagg 345
Query: 1961 aatcaatctcatgccgtcctggactaagaacgagaacataaaatccgttccgcagccggc 2020
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 346 aatcaatctcatgccgtcctggactaagaacgagaacataaaatccgttccacagccggc 405
Query: 2021 tcagcaaacaaacagacaagtcaacaacggggagaagtacagcaatccatttgttccgct 2080
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 406 tcagcaaacaaacagacaagtcaacaacggggagaagtacagcaacccatttgtgccgct 465
Query: 2081 gcaagttcaaaccagccggaggcgcgtccaaaactcaagtggttcatcacagagacgtga 2140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 466 gcaagttcaaaccagccggaggcgcgtccaaaactcaagtggttcatcacagagacgcga 525
Query: 2141 tctcgaaggactaccgacaccgaaggtcattcaccccacaccaaataacaccttgtttaa 2200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 tctcgaaggactaccgacaccgaaggtcattcaccccacaccaaataacaccttgtttaa 585
Query: 2201 tgttcagccgcagcagaatcgtcctcagaggaagaaaaaaccaagaatagctgccaactt 2260
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 tgttcagccgcagcagagtcgtcctcagaggaagaaaaaaccaagaatagctgccaactt 645
Query: 2261 gcccttccagatggactaacaacattacactgtctataagatacacacagatctccgcac 2320
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 646 gcccttccagatggactaacaacattacactgtctataagatacacacagatccccgcac 705
Query: 2321 gcacggggctacacgtgtctttatctcctgctttttaaatattcgtttatgtatccatcg 2380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 gcacggggctacacgtgtctttatctcctgctttttaaatattcgtttatgtatccatcg 765
Query: 2381 cgtgtgtgtcgactgattgtgcactgtacagtaaccttaatac 2423
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 cgtgtgtgtcgactgattgtgcactgtacagtaaccttaatac 808
Score = 246 bits (124), Expect = 2e-64
Identities = 130/132 (98%)
Strand = Plus / Plus
Query: 1649 cgccaccaacctgctgagaagtctgttgaggatcagcgagggagaggcggacggatccag 1708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgccaccaacctgctgagaagtctgttgaggatcagcgagggagaggcggacggatccag 60
Query: 1709 gagcaataagaatgttccagagacgaacagcaactggcgttcaagaagtgacaaagcgac 1768
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 61 gagcaataagaacgttccagagacgaacagcaactggcggtcaagaagtgacaaagcgac 120
Query: 1769 ctcgccgaataa 1780
||||||||||||
Sbjct: 121 ctcgccgaataa 132
>BF01055A1H12
Length = 743
Score = 192 bits (97), Expect = 2e-48
Identities = 143/157 (91%), Gaps = 1/157 (0%)
Strand = Plus / Plus
Query: 185 cgtgaatcaaatgtcattttaaatgtctgtaaacatttctatttcgtaatgtatgactaa 244
||||||||||||| ||| ||||| |||||||||||||| ||||||||||||||||| |||
Sbjct: 468 cgtgaatcaaatgacatgttaaacgtctgtaaacatttgtatttcgtaatgtatgattaa 527
Query: 245 aagtatgtaagtaagaatt-aataatataggtttaattgttatatgggtagggtatgcag 303
|||||||| |||||||||| ||||||| ||||||| ||||||||||||||| ||| ||||
Sbjct: 528 aagtatgtgagtaagaattaaataatacaggtttagttgttatatgggtagagtaggcag 587
Query: 304 tgcttatttgcgtctatggtgtgcacgccactgatat 340
||||||||||| ||| ||| |||||||||||||||||
Sbjct: 588 tgcttatttgcatctgtggagtgcacgccactgatat 624
>BF14_2249_C1
Length = 1315
Score = 135 bits (68), Expect = 4e-31
Identities = 121/136 (88%), Gaps = 2/136 (1%)
Strand = Plus / Plus
Query: 1 atgcaaacatttgctgcatacaacacgggattcgtagatcgtccttgagatcatttgtat 60
|||||||||||| ||||||||| |||| |||| |||||||||||||||| |||||||
Sbjct: 1146 atgcaaacattt-ctgcataca-cacgagattagtagatcgtccttgagtatttttgtat 1203
Query: 61 agaaaataagcacagagtggtcgtgcctagcgccgctctggctgcatagcggcgctagca 120
|||||||||||| ||||||| |||||||||||||||| ||||||||||| ||||||||
Sbjct: 1204 ggaaaataagcaccgagtggttgtgcctagcgccgctccggctgcatagcaacgctagca 1263
Query: 121 gttagcagcgaccgat 136
|||||||||| |||||
Sbjct: 1264 gttagcagcggccgat 1279
>BF01062A1H02
Length = 876
Score = 81.8 bits (41), Expect = 5e-15
Identities = 53/57 (92%)
Strand = Plus / Plus
Query: 274 gtttaattgttatatgggtagggtatgcagtgcttatttgcgtctatggtgtgcacg 330
||||| |||||||| |||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 798 gtttagttgttatacgggtagggtatgcagtgcttatttgcatctatggagtgcacg 854
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 255,426
Number of extensions: 4885
Number of successful extensions: 4885
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 4882
Number of HSP's successfully gapped: 5
Length of query: 2779
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 2762
Effective length of database: 8,119,229
Effective search space: 22425310498
Effective search space used: 22425310498
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)