BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN17992 (UTR included)
(2794 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01045A1F08 1136 0.0
>BF01045A1F08
Length = 826
Score = 1136 bits (573), Expect = 0.0
Identities = 588/593 (99%)
Strand = Plus / Plus
Query: 603 gaaactgcaaatttattacttagaaatgatgttccaccacttgttgacttatatggacgt 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77 gaaactgcaaatttattacttagaaatgatgttccaccacttgttgacttatatggacgt 136
Query: 663 aaacatgactatttacgaatctccctaactgaaaaatgcaatttaaggtgtcaatactgc 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 aaacatgactatttacgaatctccctaactgaaaaatgcaatttaaggtgtcaatactgc 196
Query: 723 atgccggccgaaggtgtaaagcttagtcctcgtgacaaaatattgtctaatgaagaagtt 782
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 atgccggccgaaggtgtcaagcttagtcctcgtgacaaaatattgtctaatgaagaagtt 256
Query: 783 ttacgattggcaagagtgtttgccgctcttggtataaataaaatacggttaactggtggc 842
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 257 ttacgattggcaagagtgtttgccgctcttggtataaataaaatacggctaactggtggc 316
Query: 843 gagcctacattgagaaaagaccttgtgaatattgtccaggaattgaccaacctccatggg 902
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 317 gagcctacattgagaaaagaccttgtgaatattgtccagaaattgaccaacctccatggg 376
Query: 903 ataacgacagtggcaatgacaactaatggtatagccctaacaaggaaattaccttcgcta 962
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 atatcgacagtggcaatgacaactaatggtatagccctaacaaggaaattaccttcgcta 436
Query: 963 caacgtgctggtctctcagctctgaatttgtctttggattcgctgaaaccagaacgtttt 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 caacgtgctggtctctcagctctgaatttgtctttggattcgctgaaaccagaacgtttt 496
Query: 1023 gagcgcatggcacgaagaccgggcttaccccatgtgctggccagcatggatttggcgctg 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gagcgcatggcacgaagaccgggcttaccccatgtgctggccagcatggatttggcgctg 556
Query: 1083 cagcttggcttcaaatccgttaaaattaataccgtgcttatgaaaggttttaatgatgac 1142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 cagcttggcttcaaatccgttaaaattaataccgtgcttatgaaaggttttaatgatgac 616
Query: 1143 gaaatttgcgatttcattgaactaactcgcgaccgtgatatggatataaggtt 1195
||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 617 gaaatttgcgatttcattgaactaactcgcgaccgtgatatggatatgaggtt 669
Score = 97.6 bits (49), Expect = 9e-20
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 316 aaataattaaatattagactattagcaatcagcttaataattatattgagttt 368
|||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 13 aaataattaaatattagactattagcaatcagcttaataattatgttgagttt 65
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 353,744
Number of extensions: 8214
Number of successful extensions: 8214
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 8214
Number of HSP's successfully gapped: 2
Length of query: 2794
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 2777
Effective length of database: 8,119,229
Effective search space: 22547098933
Effective search space used: 22547098933
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)