BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN18106 (UTR included)
(1783 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01060A1F09 1518 0.0
BF01005B1F12 141 4e-33
>BF01060A1F09
Length = 869
Score = 1518 bits (766), Expect = 0.0
Identities = 787/795 (98%)
Strand = Plus / Plus
Query: 775 tgtacgtcatagcggtcgccacacacctggggacacagatctggatgacgctagtatcag 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46 tgtacgtcatagcggtcgccacacacctggggacacagatctggatgacgctagtatcag 105
Query: 835 gtatagtgttgtacttctctctgccccggcatgagtttggtcgcgtgcaaaccgtacttt 894
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 106 gtatagtgttgtacttctctctgccccggcatgaatttggtcgcgtgcaaaccgtacttt 165
Query: 895 tccctgtgtactacgcgttcaactccgtggtgagcctgctggctgtcctcgcctacttca 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 tccctgtgtactacgcgttcaactccgtggtgagcctgctggctgtcctcgcctacttca 225
Query: 955 ggacccagtgcctcacgcgcttcgaaaacacatcctggatacaactagcactactgttag 1014
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 226 ggacccagtgcctcacgcgcttcgaaaacacatcctggatacaactagcgttactgttag 285
Query: 1015 tggtattcagtattgaggcgtacgtgcgtctgggtctagtggcgcccatgttgcgcgcca 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 tggtattcagtattgaggcgtacgtgcgtctgggtctagtggcgcccatgttgcgcgcca 345
Query: 1075 aacacgtcaagacccagatggaggaagcggccggcggcggacaggaagtcggtagtctga 1134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 aacacgtcaagacccagatggaggaagcggccggcggcggacaggaagtcggtagtctga 405
Query: 1135 tcctgggagagctggcccactgtcctcgctacctgcgcgtgttgcgtaccttccgtgcct 1194
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 406 tcctgggagagctggcccactgtcctcgctacctgcgcgtgttgcgcaccttccgtgcct 465
Query: 1195 atcactcgtctatcgccatgggcaccatgataaccttgggatgctccttctactccacca 1254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 atcactcgtctatcgccatgggcaccatgataaccttgggatgctccttctactccacca 525
Query: 1255 tgatcgtggtcgactccatgtgccattgaaacagctgattcgaggctattatatcgaata 1314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 tgatcgtggtcgactccatgtgccattgaaacagctgattcgaggctattatatcgaata 585
Query: 1315 tttaatacttttagcaccgactctaaacaattgtgtgcgcccgaccttatctttactagt 1374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 tttaatacttttagcaccgactctaaacaattgtgtgcgcccgaccttatctttactagt 645
Query: 1375 attagaaactaccttaatctcttacgagcattgtcagccgatggatacgcactatattta 1434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 attagaaactaccttaatctcttacgagcattgtcagccgatggatacgcactatattta 705
Query: 1435 tatgacgcaacttagactttctcaacataaatattgacgtgttcacaaaatagttttatt 1494
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 tatgccgcaacttagactttctcaacataaatattgacgtgttcacaaaatagttttatt 765
Query: 1495 aattagatatcccctttcattaaacgaatggaaacaaacagacaattgttattaatatat 1554
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 766 aattagatatcccctttcattnnncgaatggaaacaaacagacaattgttattaatatat 825
Query: 1555 atttgagaacgttta 1569
|||||||||||||||
Sbjct: 826 atttgagaacgttta 840
Score = 75.8 bits (38), Expect = 2e-13
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 405 gacgtgtcgcttaacgtgaaaatgtgtaatgtttgtac 442
||||||||||||||||||||||||||||||||||||||
Sbjct: 13 gacgtgtcgcttaacgtgaaaatgtgtaatgtttgtac 50
>BF01005B1F12
Length = 691
Score = 141 bits (71), Expect = 4e-33
Identities = 84/87 (96%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 1698 attgcattaaattttataattgatgcttattaaattaatacatttt-tattatttaacta 1756
|||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 1 attgcattaaattttataattgatgcttattaaattaatattttttttattatttaacta 60
Query: 1757 attagttatagatatgaattgggtttt 1783
|||||||||||||||||||||||||||
Sbjct: 61 attagttatagatatgaattgggtttt 87
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 201,614
Number of extensions: 4154
Number of successful extensions: 4154
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 4153
Number of HSP's successfully gapped: 3
Length of query: 1783
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1766
Effective length of database: 8,119,229
Effective search space: 14338558414
Effective search space used: 14338558414
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)