BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN18332 (UTR included)
(2242 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01019A1H08 82 4e-15
BF14_335_C4 82 4e-15
BF01029A1A09 74 1e-12
>BF01019A1H08
Length = 504
Score = 81.8 bits (41), Expect = 4e-15
Identities = 66/73 (90%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 495 cattccatggattcacagtgcgggtgccgagtccatcgtgtagc-gggagaggagcttca 553
||||| |||||||||| |||||||||||| |||||||| || || |||||||||||||||
Sbjct: 381 cattcaatggattcaccgtgcgggtgccgggtccatcgcgttgcagggagaggagcttca 440
Query: 554 acggtgcctggga 566
|| ||||||||||
Sbjct: 441 acagtgcctggga 453
>BF14_335_C4
Length = 1491
Score = 81.8 bits (41), Expect = 4e-15
Identities = 71/81 (87%)
Strand = Plus / Minus
Query: 490 ctcatcattccatggattcacagtgcgggtgccgagtccatcgtgtagcgggagaggagc 549
|||| |||||||||||||||| |||||| ||| | | |||||| || || ||||||||||
Sbjct: 1352 ctcagcattccatggattcaccgtgcggttgcggggaccatcgcgttgcaggagaggagc 1293
Query: 550 ttcaacggtgcctgggacttg 570
|||||| ||||||||||||||
Sbjct: 1292 ttcaacagtgcctgggacttg 1272
>BF01029A1A09
Length = 732
Score = 73.8 bits (37), Expect = 1e-12
Identities = 43/45 (95%)
Strand = Plus / Minus
Query: 2198 aattatataaggtggcacccggaggttccgggaaaactacgaaac 2242
||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 114 aattatataaggtggcaaccggaggttccaggaaaactacgaaac 70
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 333,051
Number of extensions: 16957
Number of successful extensions: 16957
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 16956
Number of HSP's successfully gapped: 3
Length of query: 2242
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 2225
Effective length of database: 8,119,229
Effective search space: 18065284525
Effective search space used: 18065284525
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)