BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN18436 (UTR included)
(1957 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF14_2223_C1 902 0.0
BF01029A1A09 105 3e-22
>BF14_2223_C1
Length = 833
Score = 902 bits (455), Expect = 0.0
Identities = 479/488 (98%)
Strand = Plus / Plus
Query: 540 agattcggcgtgaacgatgactgccaggagagtgtggagagatgctgcaagaaatccaag 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 agattcggcgtgaacgatgactgccaggagagtgtggagagatgctgcaagaaatccaag 405
Query: 600 ccttacgtggagccgacgacccccgcacccccgacggagaggggttgcgggtaccggaac 659
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 406 ccttacgtggagccgacgacccccgcacccccaacggagaggggctgcgggtaccggaac 465
Query: 660 ccccacggcatcggcttcacaataaccggcgggaatggtgacgaggcccagttcggcgag 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 ccccacggcatcggcttcacaataaccggcgggaatggtgacgaggcccagttcggcgag 525
Query: 720 ttcccgtgggtggtggccttgctggacgccgctaacggcagctacgtgggggtcggggtg 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 ttcccgtgggtggtggccttgctggacgccgctaacggcagctacgtgggggtcggggtg 585
Query: 780 ctcgtccaccccctcgcggtgatgacgggggcgcacgtggtgtacaaatacccggccggc 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 ctcgtccaccccctcgcggtgatgacgggggcgcacgtggtgtacaaatacccggccggc 645
Query: 840 gggctaatagctcgggccggtgagtgggatacgcagaccacgaaagagcccctcaagtcg 899
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 646 gggttaatagctcgggccggtgagtgggatacgcagaccacaaaagagcccctcaagtcg 705
Query: 900 caggagcgagtcgtggaagacattgttataaaggaaggtttcaaccctaagactctccat 959
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct: 706 caggagcgagtcgtggaagacattgttataaaggaaggttnnnaccctaagactctccgt 765
Query: 960 aacgacatggccctcctccggctccagcgacccctggagctggcggctcacatcaacgtc 1019
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 766 aacgacatggccctcctccggctccagcgatccctggagctggcggctcacatcaacgtc 825
Query: 1020 atctgtct 1027
||||||||
Sbjct: 826 atctgtct 833
>BF01029A1A09
Length = 732
Score = 105 bits (53), Expect = 3e-22
Identities = 65/69 (94%)
Strand = Plus / Minus
Query: 1872 aattatatagagtggcaaccagaggttccgggaaaactacgaaacatacttatatgtata 1931
||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 114 aattatataaggtggcaaccggaggttccaggaaaactacgaaacatacttatatgtata 55
Query: 1932 ttataataa 1940
|||||||||
Sbjct: 54 ttataataa 46
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 215,586
Number of extensions: 4396
Number of successful extensions: 4396
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 4396
Number of HSP's successfully gapped: 2
Length of query: 1957
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1940
Effective length of database: 8,119,229
Effective search space: 15751304260
Effective search space used: 15751304260
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)