BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN18590 (UTR included)
(2560 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF14_393_C1 1057 0.0
>BF14_393_C1
Length = 816
Score = 1057 bits (533), Expect = 0.0
Identities = 552/557 (99%), Gaps = 1/557 (0%)
Strand = Plus / Plus
Query: 2004 gccccagtattgaatgccacagacagcatcctcaatgaaactagtttgcttccgtaaagt 2063
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 gccccagtattgaatgccacagacagcatcctcaatgaaactagtttgcttccgtaaagt 72
Query: 2064 tggagtatgttaagtgccagtgccattattatagatatagaaccgtccgtggcatattaa 2123
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 cggagtatgttaagtgccagtgccattattatagatatagaaccgtccgtggcatattaa 132
Query: 2124 agtgcaatagaaacgtaacgcaggaacgacatttctgcaaattcggacatataagttagt 2183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 agtgcaatagaaacgtaacgcaggaacgacatttctgcaaattcggacatataagttagt 192
Query: 2184 tttagaacaagtagtatgtaaagacgcctaacaagtttatttgtgtgaaatatgtaatat 2243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 tttagaacaagtagtatgtaaagacgcctaacaagtttatttgtgtgaaatatgtaatat 252
Query: 2244 attctgtaaatatttaaataatattaattatctccaaaatttaagtaataacgtagtatt 2303
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 attctgtaa-tatttaaataatattaattatctccaaaatttaagtaataacgtagtatt 311
Query: 2304 cacattattttgagcgtaggctttacggtacccattgacatttacaatattgcagtctta 2363
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 cacattattctgagcgtaggctttacggtacccattgacatttacaatattgcagtctta 371
Query: 2364 gaccgaggtatagaaatcaatcatttattatatattgtattaaaattattaaatattttg 2423
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 372 gaccgaggtatagaaatcaatcatttattatatattgtattaaagttattaaatatttta 431
Query: 2424 taagcaacaattaataaaaataaatcgtttcaacaaaatttatttgatatataatcaata 2483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 taagcaacaattaataaaaataaatcgtttcaacaaaatttatttgatatataatcaata 491
Query: 2484 attgaactatccgatgagacttgtgctgttataaatgacgtattacttagatatatatta 2543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 attgaactatccgatgagacttgtgctgttataaatgacgtattacttagatatatatta 551
Query: 2544 tgacacaaaattgtcat 2560
|||||||||||||||||
Sbjct: 552 tgacacaaaattgtcat 568
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 313,109
Number of extensions: 6677
Number of successful extensions: 6677
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 6676
Number of HSP's successfully gapped: 1
Length of query: 2560
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 2543
Effective length of database: 8,119,229
Effective search space: 20647199347
Effective search space used: 20647199347
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)