BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN18802 (UTR included)
(2822 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01021A1B05 969 0.0
>BF01021A1B05
Length = 767
Score = 969 bits (489), Expect = 0.0
Identities = 498/501 (99%)
Strand = Plus / Plus
Query: 1583 gtatacaggatcttaagatcgaccgcggctcactggacaaggtcaagtgtggagtcgggg 1642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gtatacaggatcttaagatcgaccgcggctcactggacaaggtcaagtgtggagtcgggg 326
Query: 1643 agctcaagacactcatagcaacacagcactctaacgttgtgtctaacgtagctcatgtcc 1702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 agctcaagacactcatagcaacacagcactctaacgttgtgtctaacgtagctcatgtcc 386
Query: 1703 gcagcacgctgtccacgttcgaaggcatctttaaggatcacaacgaactgttgaagagat 1762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gcagcacgctgtccacgttcgaaggcatctttaaggatcacaacgaactgttgaagagat 446
Query: 1763 ccgtcaccaacaccgacacggtgcaggctccgtgtgtgcagcagttgacggaagcgctcg 1822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ccgtcaccaacaccgacacggtgcaggctccgtgtgtgcagcagttgacggaagcgctcg 506
Query: 1823 tggctcgcggccagcaggtgtccgaactgctggaagagctggcagctgtgaaggcacgca 1882
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tggctcgcggccagcaggtatccgaactgctggaagagctggcagctgtgaaggcacgca 566
Query: 1883 ccgacgacgccgacttactgagggcccaggtcgacttgtacaaaagcgacttcgaagctg 1942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ccgacgacgccgacttactgagggcccaggtcgacttgtacaaaagcgacttcgaagctg 626
Query: 1943 agagggaatcccgagagaagatggccagcgagaaagaaaatctcctcgcagacctcagag 2002
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 627 agagggaatcccgggagaagatggccagcgagaaagaaaatctcctcgcagaccttagag 686
Query: 2003 tggctcagaagaagatacaagacttgacaacacagttggaggagcttcgtgttctgagtc 2062
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 tggctcagaagaagatacaagacttgacaacacagttggaggagcttcgtgttctgagtc 746
Query: 2063 caagcctgcacaagagcatca 2083
|||||||||||||||||||||
Sbjct: 747 caagcctgcacaagagcatca 767
Score = 438 bits (221), Expect = e-122
Identities = 224/225 (99%)
Strand = Plus / Plus
Query: 1359 ggaattcagccagcacaagtccaacgtgtctgagacggtgaaggtgtacaaagaccagat 1418
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1 ggaattcagccagcacaagtccaacgtgtctgagacggtgaagatgtacaaagaccagat 60
Query: 1419 ccaggaactaaaggatagaattaaagaggtccagacgacggtgttccagcccatccgcgt 1478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ccaggaactaaaggatagaattaaagaggtccagacgacggtgttccagcccatccgcgt 120
Query: 1479 gtccgtgtcggagccgtcgagttcgtccgagttcctcaacaatgtcaagctctacgaccg 1538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtccgtgtcggagccgtcgagttcgtccgagttcctcaacaatgtcaagctctacgaccg 180
Query: 1539 cacgctcaagcacctggccgactacctcaactcgctcagtaacgg 1583
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cacgctcaagcacctggccgactacctcaactcgctcagtaacgg 225
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 303,173
Number of extensions: 6403
Number of successful extensions: 6403
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 6403
Number of HSP's successfully gapped: 2
Length of query: 2822
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 2805
Effective length of database: 8,119,229
Effective search space: 22774437345
Effective search space used: 22774437345
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)