BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN18882 (UTR included)
(1207 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01012A1E04 109 1e-23
BF01052B1F12 103 6e-22
BF01012A1B09 101 3e-21
BF01025B2E05 98 4e-20
BF01011A1H06 96 2e-19
BF01056A1B08 92 2e-18
BF14_729_C2 84 6e-16
BF01049B2H03 70 9e-12
>BF01012A1E04
Length = 841
Score = 109 bits (55), Expect = 1e-23
Identities = 65/67 (97%), Gaps = 1/67 (1%)
Strand = Plus / Minus
Query: 919 tgagatctaagactttcgcgagttttattcatttaaatgaaagtaatat-ttttcggata 977
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 618 tgagatctaagactttcgcgagttttattcatttaaatgaaactaatatattttcggata 559
Query: 978 tactacg 984
|||||||
Sbjct: 558 tactacg 552
>BF01052B1F12
Length = 785
Score = 103 bits (52), Expect = 6e-22
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 918 atgagatctaagactttcgcgagttttattcatttaaatgaaagtaatatttttcggata 977
|||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 297 atgaaatctaagaatttcgcgagttttattcatttaaatgaaactaatatttttcggata 356
Query: 978 tact 981
||||
Sbjct: 357 tact 360
>BF01012A1B09
Length = 841
Score = 101 bits (51), Expect = 3e-21
Identities = 63/67 (94%)
Strand = Plus / Plus
Query: 918 atgagatctaagactttcgcgagttttattcatttaaatgaaagtaatatttttcggata 977
||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 705 atgagatctaagactgtcgcgagttttattcatttaaatgaaactaatatatttcggata 764
Query: 978 tactacg 984
||||||
Sbjct: 765 cactacg 771
>BF01025B2E05
Length = 759
Score = 97.6 bits (49), Expect = 4e-20
Identities = 62/65 (95%), Gaps = 1/65 (1%)
Strand = Plus / Minus
Query: 915 ttaatgagatctaagactttcgcgagttttattcatttaaatgaaagtaatat-ttttcg 973
|||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||
Sbjct: 122 ttaatgagatctaagactttcgcgagttttattcatttaaatgaaactagtatattttcg 63
Query: 974 gatat 978
|||||
Sbjct: 62 gatat 58
>BF01011A1H06
Length = 739
Score = 95.6 bits (48), Expect = 2e-19
Identities = 66/72 (91%)
Strand = Plus / Minus
Query: 913 acttaatgagatctaagactttcgcgagttttattcatttaaatgaaagtaatatttttc 972
|||||||||||||||||| |||||||| ||||||||||||||||||| || ||||||||
Sbjct: 611 acttaatgagatctaagattttcgcgacttttattcatttaaatgaatctagtatttttc 552
Query: 973 ggatatactacg 984
||||| ||||||
Sbjct: 551 ggataaactacg 540
>BF01056A1B08
Length = 761
Score = 91.7 bits (46), Expect = 2e-18
Identities = 49/50 (98%)
Strand = Plus / Plus
Query: 918 atgagatctaagactttcgcgagttttattcatttaaatgaaagtaatat 967
||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 96 atgagatctaagactttcgcgagttttattcatttaaatgaaactaatat 145
>BF14_729_C2
Length = 1289
Score = 83.8 bits (42), Expect = 6e-16
Identities = 63/70 (90%)
Strand = Plus / Minus
Query: 915 ttaatgagatctaagactttcgcgagttttattcatttaaatgaaagtaatatttttcgg 974
||||||||||||||||||||||| ||||||| |||||||||||||| || ||| |||||
Sbjct: 677 ttaatgagatctaagactttcgccagttttaatcatttaaatgaaactagaattattcgg 618
Query: 975 atatactacg 984
||| ||||||
Sbjct: 617 ataaactacg 608
>BF01049B2H03
Length = 832
Score = 69.9 bits (35), Expect = 9e-12
Identities = 55/61 (90%), Gaps = 3/61 (4%)
Strand = Plus / Minus
Query: 916 taatgagatctaagactttcgcgagttttattcatttaaatgaaagtaatatttttcgga 975
||||||||||||||| ||| |||||| |||||||||||||||| ||||||||||||||
Sbjct: 354 taatgagatctaagattttagcgagt---attcatttaaatgaaactaatatttttcgga 298
Query: 976 t 976
|
Sbjct: 297 t 297
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 185,660
Number of extensions: 3850
Number of successful extensions: 3850
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 3848
Number of HSP's successfully gapped: 8
Length of query: 1207
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1190
Effective length of database: 8,119,229
Effective search space: 9661882510
Effective search space used: 9661882510
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)