BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN18938 (UTR included)
(2458 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01026B1D05 1237 0.0
BF01004X1E01 74 1e-12
>BF01026B1D05
Length = 661
Score = 1237 bits (624), Expect = 0.0
Identities = 654/662 (98%), Gaps = 2/662 (0%)
Strand = Plus / Plus
Query: 1683 gaggtccgcacggtccgcgacaggaaggcccgcacgcagagagacagacacaacttgctg 1742
|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct: 1 gaggtccgcacggtccgcgacaggaaggcccgcacgnngagagacagacacaacctgctg 60
Query: 1743 gccgacaggcagaagctcaaggagaggttcgccgcgctctacagacacgtgttccagcac 1802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gccgacaggcagaagctcaaggagaggttcgccgcgctctacagacacgtgttccagcac 120
Query: 1803 ctccgcgaccctgaaggacgacccttgtcctccagccaatactccctacaacaagcggct 1862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ctccgcgaccctgaaggacgacccttgtcctccagccaatactccctacaacaagcggct 180
Query: 1863 gacggcagcgtagttctcgtgcccaggatgggaggagaccactccatgaaccggacggag 1922
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gacggcagcgtagtgctcgtgcccaggatgggaggagaccactccatgaaccggacggag 240
Query: 1923 gaggacctcgagcggaagaacaactacgagcactagtgcggcaccgaccgaggacagctc 1982
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gaagacctcgagcggaagaacaactacgagcactagtgcggcaccgaccgaggacagctc 300
Query: 1983 gcggatgggtggccgccttttaactctcgcttatcctttatatgagttaagttaaaatat 2042
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gcggatgggtggccgccttttaactctcgcttatcctttatatgagttaagttaaaatat 360
Query: 2043 attatatatatgttggatatcaaacacaccacgtgcggcccacgccgggattgtgtcccg 2102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 attatatatatgttggatatcaaacacaccacgtgcggcccacgccgggattgtgtcccg 420
Query: 2103 gagatacgggatcgaggaaccccgatgtggactgctggtgttggcaggcgtgatgtcaat 2162
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gagatacgggatcg-ggaaccccgatgtggactgctggtgttggcaggcgtgatgtcaat 479
Query: 2163 gttccggttttacgggattccgggattcaagaacacgggatcattgagtaccaatgggat 2222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 gttccggttttacgggattccgggattcaagaacacgggatcattgagtaccaatgggat 539
Query: 2223 tccggaaatatagtcgacttcatgagccaatgaatctaaatacccggacaagcgtgtaat 2282
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 gccggaaatatagtcgacttcatgagccaatgaatctaaatacccggacaagcgtgtaat 599
Query: 2283 ttaatcccatgttaaagtaattttggttttcggaagcagta-gagtcccgggttcccggg 2341
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 600 ttaatcccatgttaaagtaattttggttttcggaagcagtatgagtcccgggttcccggg 659
Query: 2342 at 2343
||
Sbjct: 660 at 661
>BF01004X1E01
Length = 650
Score = 73.8 bits (37), Expect = 1e-12
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 2418 ggcgtcgtcgcgtgaagtcgcgcggcgagcttgtcttattt 2458
||||||| |||||||||||||||||||||||||||||||||
Sbjct: 13 ggcgtcgccgcgtgaagtcgcgcggcgagcttgtcttattt 53
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 228,626
Number of extensions: 4753
Number of successful extensions: 4753
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 4751
Number of HSP's successfully gapped: 2
Length of query: 2458
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 2441
Effective length of database: 8,119,229
Effective search space: 19819037989
Effective search space used: 19819037989
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)