BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN19090 (UTR included)
(1630 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01044B1D08 1217 0.0
>BF01044B1D08
Length = 673
Score = 1217 bits (614), Expect = 0.0
Identities = 658/673 (97%), Gaps = 1/673 (0%)
Strand = Plus / Plus
Query: 802 gaccaagtcttagcactgctatcattattccatatagggacagagctgaacaattacgcg 861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaccaagtcttagcactgctatcattattccatatagggacagagctgaacaattacgcg 60
Query: 862 ctttcttggtctatatgcacatgtttctaagaagacagtttatccactacaggatctatg 921
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctttcttggtctatatgcacatgtttctaagaagacagtttatccactacaggatctatg 120
Query: 922 ttgtggaacaagttgatagtaagccatttaacacggctaagctaatgaatatcggggctg 981
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttgtggaacaagttgatagtaagccatttaacacggctaagctaatgaatatcggggctg 180
Query: 982 cagcggcaatacgcgcaggttttccttgcctggtattgcataatgtggatctactcccac 1041
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 181 cagcggcaatacgcgcaggttttccttgcctggtactgcataatgtggatctactcccac 240
Query: 1042 ttaggccagctaatttgtatgcctgtacaaaacttcctcgacatctatcatctagtatca 1101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttaggccagctaatttgtatgcctgtacaaaacttcctcgacatctatcatctagtatca 300
Query: 1102 ataaattgaggttgatagtttttatttagatatttttcaaatataagtacaatatgtttc 1161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ataaattgaggttgatagtttttatttagatatttttcaaatataagtacaatatgtttc 360
Query: 1162 atagaactgcccgaccataatactttaataacattag-ttttttataacattaccaattc 1220
||||||||||| ||||||||||||||||||| || || ||||||||||||||| ||||||
Sbjct: 361 atagaactgcctgaccataatactttaataatatcagtttttttataacattaacaattc 420
Query: 1221 tagatttgtccttccacaccaaaatgtatttagtggtgttgtgtcaatatcttcgaaaca 1280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tagatttgtccttccacaccaaaatgtatttagtggtgttgtgtcaatatcttcgaaaca 480
Query: 1281 atttaaacttataaatggaatgacaaatggaaacactggcgataaaagtgatcttcacaa 1340
|||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 481 atttcaacttataaatggaatgacaaatgggaacactggtgataaaagtgatcttcacaa 540
Query: 1341 tcgtcttaaagttgcaggtataaaaattactcgttatgaaccttcattgagtcgttatta 1400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tcgtcttaaagttgcaggtataaaaattactcgttatgaaccttcattgagtcgttatta 600
Query: 1401 tatgtcttcacagaaattacaacggaaagtgtaagtgcaaaagctacctgttttgtataa 1460
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 601 tatgtcttcacagaaattacaacnnnnngtgtaagtgcaaaagctacctgttgtgtataa 660
Query: 1461 ttttttgtatgag 1473
|||||||||||||
Sbjct: 661 ttttttgtatgag 673
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 239,539
Number of extensions: 5144
Number of successful extensions: 5144
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 5142
Number of HSP's successfully gapped: 1
Length of query: 1630
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1613
Effective length of database: 8,119,229
Effective search space: 13096316377
Effective search space used: 13096316377
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)