BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN19198 (UTR included)
(4510 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF14_183_C1 783 0.0
>BF14_183_C1
Length = 1145
Score = 783 bits (395), Expect = 0.0
Identities = 448/470 (95%), Gaps = 18/470 (3%)
Strand = Plus / Plus
Query: 3525 tccgcggatccttcggagatgtccgaaatagccgcgatgacgtcacagattgaagagaac 3584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 tccgcggatccttcggagatgtccgaaatagccgcgatgacgtcacagattgaagagaac 195
Query: 3585 gagaggaaaataagcctggcattagatttccagtccgaagtcgatcagaggaaactttgc 3644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 gagaggaaaataagcctggcattagatttccagtccgaagtcgatcagaggaaactttgc 255
Query: 3645 gctgaggaggatttattgaacaggcaaatcctggagctgcaacaagtatcggacattgat 3704
||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 256 gctgaagaggatttactgaacaggcaaatcctggagctgcaacaagtgtcggacattgat 315
Query: 3705 atcgacaccgaaaccgatgacacagaggcgagtatcagctttgagaccgatgccgagatc 3764
||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 316 atcgacaccgaaaccgatgacacagag------------------accgatgccgagatc 357
Query: 3765 ctcatagaagatccgcctcaggttctatcagagaacttgggttcgctagcggcaagtcta 3824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ctcatagaagatccgcctcaggttctatcagagaacttgggttcgctagcggcaagtcta 417
Query: 3825 gaagatcagtacgagacggcgctagctgggatgacctgggcggagagagtggacacgctc 3884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 gaagatcagtacgagacggcgctagctgggatgacctgggcggagagagtggacacgctc 477
Query: 3885 gtagtactggaggctttggtggctagagatcctggtcgagcgcaacaattacacgagaaa 3944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gtagtactggaggctttggtggctagagatcctggtcgagcgcaacaattacacgagaaa 537
Query: 3945 ctatctcaaggaataaagcgccgtggaagcctacaggatgccttacgaag 3994
||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 538 ctatctcaaggaataaaacgccgtggaagcctacaggatgccttacgaag 587
Score = 262 bits (132), Expect = 4e-69
Identities = 132/132 (100%)
Strand = Plus / Plus
Query: 3141 cctcaactgcaagagaagaaaacagagaaaccagaaaaagttgttaaggttgtcgcaaaa 3200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 cctcaactgcaagagaagaaaacagagaaaccagaaaaagttgttaaggttgtcgcaaaa 61
Query: 3201 ctgaagtcagagaacaaaactaacgatccatcaatgattagacaaaaatctgacgtcact 3260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 ctgaagtcagagaacaaaactaacgatccatcaatgattagacaaaaatctgacgtcact 121
Query: 3261 ggcttaaagaca 3272
||||||||||||
Sbjct: 122 ggcttaaagaca 133
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 598,347
Number of extensions: 17554
Number of successful extensions: 17554
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 17554
Number of HSP's successfully gapped: 3
Length of query: 4510
Length of database: 8,280,457
Length adjustment: 18
Effective length of query: 4492
Effective length of database: 8,109,745
Effective search space: 36428974540
Effective search space used: 36428974540
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 35 (69.9 bits)