BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN19234 (UTR included)
(3013 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01009A2C02 1608 0.0
BF01025B2E05 90 2e-17
BF01052B1F12 86 4e-16
BF01012A1E04 86 4e-16
BF01056A1B08 84 1e-15
BF01012A1B09 80 2e-14
BF01011A1H06 74 1e-12
BF14_729_C2 74 1e-12
>BF01009A2C02
Length = 864
Score = 1608 bits (811), Expect = 0.0
Identities = 845/854 (98%), Gaps = 2/854 (0%)
Strand = Plus / Plus
Query: 468 ggtgcatggcatgttcagtgttcgttatacaaaatgg-tcttaaacaaatacaaagtaaa 526
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 12 ggtgcatggcatgttcagtgttcgttatacaaaatgnntcttaaacaaatacaaagtaaa 71
Query: 527 tccagaccttgcaatcgaaagacagaaatgcacgtttgacatcgaagagatcattaatat 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 tccagaccttgcaatcgaaagacagaaatgcacgtttgacatcgaagagatcattaatat 131
Query: 587 atttgatggaggcaaaaaaaaaacgtcacagagaagaaaaattgaggacattgtactcaa 646
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 atttgatggaggcaaaa-aaaaacgtcacagagaagaaaaattgaggacattgtactcaa 190
Query: 647 aagtggactctgctatgacgatgttcctgaggaatgcatgagtctgaaagagagatacga 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 aagtggactctgctatgacgatgttcctgaggaatgcatgagtctgaaagagagatacga 250
Query: 707 aaatgctgtgagaaaatcatgtttattttcgaaactaatgaaaactgagttacaagaaat 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 aaatgctgtgagaaaatcatgtttattttcgaaactaatgaaaactgagttacaagaaat 310
Query: 767 aacaggaattgaagatttcgagactccagcaattcgtcgaatagcagatgcacttttcaa 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 aacaggaattgaagatttcgagactccagcaattcgtcgaatagcagatgcacttttcaa 370
Query: 827 ggacatatcgccatttttattgcatttgggcatgtttgtgcccactattattgggcaatg 886
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 371 ggacatatcgccatttttattgcatttgggcatgtttgtgcccactattattggacaatg 430
Query: 887 tacttctgaacaattgatgatttggctacctaaagctctggatctacaaataatcggtgg 946
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 431 tacttctgaacaattgatgatttggctacctaaagccttggatctacaaataatcggtgg 490
Query: 947 ttacgctcagacggagcttggtcacggcacgtttatccgtggattagaaacaacagccac 1006
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ttacgctcagacggagcttggtcacggcacgtttatccgtggattagaaacaacagccac 550
Query: 1007 ttatgacgctagcactgaggagtttgtgcttcacactccaacacttacagctcacaagtg 1066
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ttatgacgctagcactgaggagtttgtgcttcacactccaacacttacagctcacaagtg 610
Query: 1067 gtgggctggcggactcgggaaaaccattaaccactgcatagtcgtagcccaactgtacac 1126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 gtgggctggcggactcgggaaaaccattaaccactgcatagtcgtagcccaactgtacac 670
Query: 1127 aaagggtgtgtgttacggtacccacttgtttatggtacagatcagagatttggataccca 1186
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 aaagggtgtgtgttatggtacccacttgtttatggtacagatcagagatttggataccca 730
Query: 1187 tatgccgctacctgggattaaagttggggaaattggacctcggatgggtttctcatcagc 1246
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 tatgccgctaccagggattaaagttggggaaattggacctcggatgggtttctcatcagc 790
Query: 1247 tgacaacggattcttgggcttcaataattttaggataccaagaaataacatgttaatgaa 1306
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 tgacaacggatttttgggcttcaataattttaggataccaagaaataacatgttaatgaa 850
Query: 1307 gcacgctcaagtac 1320
||||||||||||||
Sbjct: 851 gcacgctcaagtac 864
>BF01025B2E05
Length = 759
Score = 89.7 bits (45), Expect = 2e-17
Identities = 91/104 (87%), Gaps = 3/104 (2%)
Strand = Plus / Plus
Query: 72 ttttttacaaaaataaagcacacgtagtacctact--cgtatattcgaaaa-atattagt 128
||||||||||||||||||||| ||||||| || || |||| |||||| ||| ||||
Sbjct: 18 ttttttacaaaaataaagcacgcgtagtaggtatatccgaatatccgaaaatatactagt 77
Query: 129 ttcatttaaatgaataaaactcacgaaagttttagatctcatta 172
|||||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 78 ttcatttaaatgaataaaactcgcgaaagtcttagatctcatta 121
>BF01052B1F12
Length = 785
Score = 85.7 bits (43), Expect = 4e-16
Identities = 58/63 (92%)
Strand = Plus / Minus
Query: 108 gtatattcgaaaaatattagtttcatttaaatgaataaaactcacgaaagttttagatct 167
|||||| |||||||||||||||||||||||||||||||||||| ||||| | |||||| |
Sbjct: 359 gtatatccgaaaaatattagtttcatttaaatgaataaaactcgcgaaattcttagattt 300
Query: 168 cat 170
|||
Sbjct: 299 cat 297
>BF01012A1E04
Length = 841
Score = 85.7 bits (43), Expect = 4e-16
Identities = 59/63 (93%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 108 gtatattcgaaaa-atattagtttcatttaaatgaataaaactcacgaaagttttagatc 166
|||||| |||||| |||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 556 gtatatccgaaaatatattagtttcatttaaatgaataaaactcgcgaaagtcttagatc 615
Query: 167 tca 169
|||
Sbjct: 616 tca 618
>BF01056A1B08
Length = 761
Score = 83.8 bits (42), Expect = 1e-15
Identities = 48/50 (96%)
Strand = Plus / Minus
Query: 121 atattagtttcatttaaatgaataaaactcacgaaagttttagatctcat 170
|||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 145 atattagtttcatttaaatgaataaaactcgcgaaagtcttagatctcat 96
>BF01012A1B09
Length = 841
Score = 79.8 bits (40), Expect = 2e-14
Identities = 52/56 (92%)
Strand = Plus / Minus
Query: 115 cgaaaaatattagtttcatttaaatgaataaaactcacgaaagttttagatctcat 170
||||| |||||||||||||||||||||||||||||| ||| ||| |||||||||||
Sbjct: 760 cgaaatatattagtttcatttaaatgaataaaactcgcgacagtcttagatctcat 705
>BF01011A1H06
Length = 739
Score = 73.8 bits (37), Expect = 1e-12
Identities = 98/120 (81%), Gaps = 10/120 (8%)
Strand = Plus / Plus
Query: 53 aaacgtcgggagtttgtagttttttacaaaaataaagcacacgtagtacctactcgtata 112
||||||||||||| |||||| ||||||||||||||| ||| |||||| ||
Sbjct: 499 aaacgtcgggagtatgtagtcttttacaaaaataaatcacgcgtagtt----------ta 548
Query: 113 ttcgaaaaatattagtttcatttaaatgaataaaactcacgaaagttttagatctcatta 172
| ||||||||| ||| ||||||||||||||||||| || ||||| | |||||||||||||
Sbjct: 549 tccgaaaaatactagattcatttaaatgaataaaagtcgcgaaaatcttagatctcatta 608
>BF14_729_C2
Length = 1289
Score = 73.8 bits (37), Expect = 1e-12
Identities = 98/120 (81%), Gaps = 10/120 (8%)
Strand = Plus / Plus
Query: 53 aaacgtcgggagtttgtagttttttacaaaaataaagcacacgtagtacctactcgtata 112
||||||||||||| |||||||||| ||||||||||||||| |||| || ||
Sbjct: 567 aaacgtcgggagtatgtagtttttaacaaaaataaagcacgcgta----------gttta 616
Query: 113 ttcgaaaaatattagtttcatttaaatgaataaaactcacgaaagttttagatctcatta 172
| |||| ||| ||||||||||||||||| ||||||| ||||||| |||||||||||||
Sbjct: 617 tccgaataattctagtttcatttaaatgattaaaactggcgaaagtcttagatctcatta 676
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 401,998
Number of extensions: 8792
Number of successful extensions: 8792
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 8788
Number of HSP's successfully gapped: 8
Length of query: 3013
Length of database: 8,280,457
Length adjustment: 18
Effective length of query: 2995
Effective length of database: 8,109,745
Effective search space: 24288686275
Effective search space used: 24288686275
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)