BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN19245 (UTR included)
(1975 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01009B2F01 1334 0.0
>BF01009B2F01
Length = 742
Score = 1334 bits (673), Expect = 0.0
Identities = 682/685 (99%)
Strand = Plus / Plus
Query: 460 gtgtgtgatgtgaaagtgtttgacgaggaagattaatcaatatgaagttcgctattgacg 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 gtgtgtgatgtgaaagtgtttgacgaggaagattaatcaatatgaagttcgctattgacg 117
Query: 520 ttttggggatatttttgaaagtagttattagggtaaatcgggacacgtttgcaccactag 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 ttttggggatatttttgaaagtagttattagggtaaatcgggacacgtttgcaccactag 177
Query: 580 tggtgtcaacattgttcatcttactgacatcgctgcttgctcactgcgctcggcgactgg 639
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 tggtgtcaacattattcatcttactgacatcgctgcttgctcactgcgctcggcgactgg 237
Query: 640 tgcaaaaggcggttcgagaacccttcatcagactgctgttcgaagaagcaatagctgctg 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tgcaaaaggcggttcgagaacccttcatcagactgctgttcgaagaagcaatagctgctg 297
Query: 700 ccgaattatgcggttgctgctttgagctcatcatcgttgcagacaatttcggtgtagcga 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccgaattatgcggttgctgctttgagctcatcatcgttgcagacaatttcggtgtagcga 357
Query: 760 catacgcgatattcttattcgcgctcacgatttggtggtcgttgaactggggagaggcga 819
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 catacgcgatatttttgttcgcgctcacgatttggtggtcgttgaactggggagaggcga 417
Query: 820 cggcgtgtccctacactcatattgaggacgtcatagaaggcaaaggcgacataagaaaag 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 cggcgtgtccctacactcatattgaggacgtcatagaaggcaaaggcgacataagaaaag 477
Query: 880 ccttacttaagacatgggcagagttggctggtggactcctggtgtataaatacatacaaa 939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ccttacttaagacatgggcagagttggctggtggactcctggtgtataaatacatacaaa 537
Query: 940 tgtattgggccttagagatatctgacacccataaaaataaagccttcgaagactgtacgg 999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 tgtattgggccttagagatatctgacacccataaaaataaagccttcgaagactgtacgg 597
Query: 1000 ccgatttacaggttcctgttctttacggagctatagttgaaggagtagcgacttgtcttt 1059
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ccgatttacaggttcctgttctttacggagctatagttgaaggagtagcgacttgtcttt 657
Query: 1060 gcagactcgcgtcccgatcgctgagcgaccttaatccaaggtttgcgacagccatagatt 1119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 gcagactcgcgtcccgatcgctgagcgaccttaatccaaggtttgcgacagccatagatt 717
Query: 1120 cgttcataggaacttctcttgtcgt 1144
|||||||||||||||||||||||||
Sbjct: 718 cgttcataggaacttctcttgtcgt 742
Score = 99.6 bits (50), Expect = 2e-20
Identities = 56/58 (96%)
Strand = Plus / Plus
Query: 330 ttttgtgtcccgatttttgtcagaccctgtaccgttttagggtcccgtcactaatatg 387
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct: 1 ttttgtgtcccgatttttgtcagaccctgcaccgttttagggtcccgtcactgatatg 58
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 213,473
Number of extensions: 3356
Number of successful extensions: 3356
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 3356
Number of HSP's successfully gapped: 2
Length of query: 1975
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1958
Effective length of database: 8,119,229
Effective search space: 15897450382
Effective search space used: 15897450382
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)