BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN19258 (UTR included)
(1690 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF14_2239_C1 349 9e-96
BF01017B1A10 74 8e-13
BF01029B1H07 72 3e-12
>BF14_2239_C1
Length = 649
Score = 349 bits (176), Expect = 9e-96
Identities = 179/180 (99%)
Strand = Plus / Plus
Query: 448 tcaaacacagtggcaacatcaccctggaggatgtcattagcattgctaagaccatgagac 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tcaaacacagtggcaacatcaccctggaggatgtcattagcattgctaagaccatgagac 492
Query: 508 cacgatctatggcaagatatctgtctggaacagtcaaagaaatccttggaactgcccaat 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 cacgatctatggcaagatatctgtctggaacagtcaaagaaatccttggaactgcccaat 552
Query: 568 cagttggctgcaccgtagaaggaagaccccctcacgacttgattgttgatatcaatgagg 627
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 553 cagttggctgcaccgtagaaggaagaccccctcacgaattgattgttgatatcaatgagg 612
>BF01017B1A10
Length = 716
Score = 73.8 bits (37), Expect = 8e-13
Identities = 100/119 (84%), Gaps = 3/119 (2%)
Strand = Plus / Minus
Query: 737 atgctacccactaaaacaccagcggtcactctc-ctcaccgcctggtggatggacgcggg 795
|||||||||||||||||||||||||| |||||| || ||||| |||||| ||| ||||
Sbjct: 716 atgctacccactaaaacaccagcggttactctcattccccgcccagtggatcgacacggg 657
Query: 796 aatcgctcaaggcatgcaatccggcgacgatccggcggcaggccgcgaacggccacctc 854
|||||| ||| |||| | | ||||||||||||||||||| |||| ||||| |||||
Sbjct: 656 aatcgcacaaagcat--acgnctgcgacgatccggcggcaggtcgcgcacggcaacctc 600
>BF01029B1H07
Length = 666
Score = 71.9 bits (36), Expect = 3e-12
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 342 ttggacgcacactcgccaatccacgtggctcaaatt 377
||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttggacgcacactcgccaatccacgtggctcaaatt 36
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 196,373
Number of extensions: 4280
Number of successful extensions: 4280
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 4279
Number of HSP's successfully gapped: 3
Length of query: 1690
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1673
Effective length of database: 8,119,229
Effective search space: 13583470117
Effective search space used: 13583470117
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)