BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN19348 (UTR included)
(5843 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01055B2D02 1411 0.0
BF01021B1E06 226 3e-58
>BF01055B2D02
Length = 796
Score = 1411 bits (712), Expect = 0.0
Identities = 774/796 (97%), Gaps = 9/796 (1%)
Strand = Plus / Plus
Query: 4971 gccgcatcgacgacgcaggcgagcgtgcgatcactatagatatgacgagtcaagtctctc 5030
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gccgcaccgacgacgcaggcgagcgtgcgatcactatagatatgacgagtcaagtctctc 60
Query: 5031 caagtgttctactgtggaggcgcgtcaccgcctccgcgctgcgcctgcgccggcgccgcc 5090
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 caagtgttctactgtagaggcgcgtcaccgcctccgcgctgcgcctgcgccggcgccgcc 120
Query: 5091 acattggcgagagagatccgactctgacgactatagcgacagcgcggccaacaccactac 5150
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 acactggcgagagagatccgactctgacgactatagcgacagcgcggccaacaccactac 180
Query: 5151 taaaggttccggcgggtcgggcggtggcagtgcgtacggcagcggacggcgcaccgccag 5210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 taaaggttccggcgggtcgggcggtggcagtgcgtacggcagcggacggcgcaccgccag 240
Query: 5211 cag---------cggtggccagaacggaagtgacggcctgtcagggtccttcgtgccggt 5261
||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 241 caggtagaccagcggtggccagaacggaagcgacggcctgtcagggtccttcgtgccggt 300
Query: 5262 gccgccagatatatcatcgttaatagacaagtaccagcagagaaaagaacaggaacgtcg 5321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gccgccagatatatcatcgttaatagacaagtaccagcagagaaaagaacaggaacgtcg 360
Query: 5322 ggaatgcacgatacatgtctaacattccaggtccattttcagattttataaatttagcga 5381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaatgcacgatacatgtctaacattccaggtccattttcagattttataaatttagcga 420
Query: 5382 actgataacgaagaactaagaaaacttttacctataatagatagagttttgatggaacaa 5441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 actgataacgaagaactaagaaaacttttacctataatagatagagttttgatggaacaa 480
Query: 5442 gcttttgcttcggtatttatcgtatgtgatgtcatttgtctcagaactgtcgcccccaaa 5501
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 481 gcttttgcttcggtatttatcgtatgtgatgtcatttttctcagaactatcgcccccaaa 540
Query: 5502 atgatatggtttataaaattttctgacgcaagcgtattttacattacaattcatattata 5561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 atgatatggtttataaaattttctgacgcaagcgtattttacattacaattcatattata 600
Query: 5562 gaaaacttaactggacatttctatagacataagtaggtttaaatgttacaactgcccaaa 5621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gaaaacttaactggacatttctatagacataagtaggtttaaatgttacaactgcccaaa 660
Query: 5622 catgattaaaataagtgtcattgcttttttacgaagaagcgttcgacctcctgtagctgc 5681
||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 661 cattattgaaataagtgtcattgcttttttacgaagaagcgttcgacctgctgtagctac 720
Query: 5682 ttattatttcttatttatttttatataattattttataaggtaagaattaattctatttg 5741
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 721 ttattatttcttatttatttttatataattattttataaggtaagaattaattcttttgg 780
Query: 5742 tcaatattattgtgcg 5757
||||| ||||||||||
Sbjct: 781 tcaattttattgtgcg 796
>BF01021B1E06
Length = 743
Score = 226 bits (114), Expect = 3e-58
Identities = 121/122 (99%), Gaps = 1/122 (0%)
Strand = Plus / Plus
Query: 1725 ggcagattttttcagcaacctcgttttcaaagaggtttcagctcgtcacagcggtcggta 1784
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1 ggcagattttttcagcaacctcgttttcaa-gaggtttcagctcgtcacagcggtcggta 59
Query: 1785 cacatgtgttgcgtccaacagcgcggccaaagttaactataccgcggagttggtggtcaa 1844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 cacatgtgttgcgtccaacagcgcggccaaagttaactataccgcggagttggtggtcaa 119
Query: 1845 ag 1846
||
Sbjct: 120 ag 121
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 472,635
Number of extensions: 8108
Number of successful extensions: 8108
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 8107
Number of HSP's successfully gapped: 3
Length of query: 5843
Length of database: 8,280,457
Length adjustment: 18
Effective length of query: 5825
Effective length of database: 8,109,745
Effective search space: 47239264625
Effective search space used: 47239264625
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 35 (69.9 bits)