BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN19400 (UTR included)
(2110 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01055B2F03 180 6e-45
BF01029A1A09 109 2e-23
>BF01055B2F03
Length = 776
Score = 180 bits (91), Expect = 6e-45
Identities = 173/199 (86%), Gaps = 1/199 (0%)
Strand = Plus / Plus
Query: 75 agactacatgattgccccgatgttaggatagcaataccattccatagcttgtttggcatc 134
||||||| |||||||||||| || || ||||| || |||||||||||| ||| ||| ||
Sbjct: 561 agactacttgattgccccgacgtaagcatagccatgccattccatagcgtgtgtggtgtc 620
Query: 135 tagaatcttctggttcacacggcttggtgttcgttccgcggagtcagcggcatcattcgt 194
|| ||| ||||||||| |||| |||||| ||||||||||||||||||| ||| ||||
Sbjct: 621 aggagtctcctggttcacgcggcgcggtgttggttccgcggagtcagcggcgtcactcgt 680
Query: 195 tatatgatattttatccatacaacgatgttgccccggcgatgttcatttattttataata 254
||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 681 tatatgatattctatccatacagcgatgtt-ccccggcgatgttcatttattttataata 739
Query: 255 tgtaacgcttacataacac 273
|||| ||| ||| ||||||
Sbjct: 740 tgtagcgcgtacgtaacac 758
>BF01029A1A09
Length = 732
Score = 109 bits (55), Expect = 2e-23
Identities = 79/86 (91%), Gaps = 2/86 (2%)
Strand = Plus / Minus
Query: 1 caggaaaactacgaaactgccttatatgtatattatagtaaaaa--ttacatattaaaac 58
||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||
Sbjct: 86 caggaaaactacgaaacatacttatatgtatattataataaaaaaattacatattaaaac 27
Query: 59 ttgtaacctatacctaagactacatg 84
|| |||||||||||||||||||||||
Sbjct: 26 ttataacctatacctaagactacatg 1
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 283,947
Number of extensions: 5885
Number of successful extensions: 5885
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 5883
Number of HSP's successfully gapped: 2
Length of query: 2110
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 2093
Effective length of database: 8,119,229
Effective search space: 16993546297
Effective search space used: 16993546297
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)