BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN19711 (UTR included)
(3163 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF14_629_C1 1562 0.0
BF01040B2F03 402 e-111
BF01027B1C12 351 4e-96
>BF14_629_C1
Length = 1789
Score = 1562 bits (788), Expect = 0.0
Identities = 797/799 (99%), Gaps = 2/799 (0%)
Strand = Plus / Plus
Query: 2365 ggcgagcccgcgtgccgaggcccgagaggctagaggaggagtactaccctcgtgaacact 2424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ggcgagcccgcgtgccgaggcccgagaggctagaggaggagtactaccctcgtgaacact 459
Query: 2425 accagcgctacccgcgggactactccagagactaccacgagggctactcgcacgactacc 2484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 accagcgctacccgcgggactactccagagactaccacgagggctactcgcacgactacc 519
Query: 2485 cgcacggcgagccctacgaccgcgaggcctacggccacgactacacgcgggactacggcc 2544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 cgcacggcgagccctacgaccgcgaggcctacggccacgactacacgcgggactacggcc 579
Query: 2545 gggagccctacggccgggagtcctacggcggcgggcgggaggagcgccccggccggccca 2604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 gggagccctacggccgggagtcctacggcggcgggcgggaggagcgccccggccggccca 639
Query: 2605 gggagcgcgagccctccgacgagtacggagcatcccgccgcgcgctcaacgcggtctagc 2664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 gggagcgcgagccctccgacgagtacggagcatcccgccgcgcgctcaacgcggtctagc 699
Query: 2665 gcccccctcccttcctcccccgccccgtatccgcacctctgacatttcaactcctgaccg 2724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 gcccccctcccttcctcccccgccccgtatccgcacctctgacatttcaactcctgaccg 759
Query: 2725 ttcgcatgtgggtaggagtcagccgcgtgtccgccagtgaagctagtgagaggccgcggc 2784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 ttcgcatgtgggtaggagtcagccgcgtgtccgccagtgaagctagtgagaggccgcggc 819
Query: 2785 gcgtcccccttattgtttagttcggacgtcgccggccacattagtatcgttttagtaact 2844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 gcgtcccccttattgtttagttcggacgtcgccggccacattagtatcgttttagtaact 879
Query: 2845 ggcgccacctccaagttcctcggccggagtcggtcgctggatacgttagtgcttaagatt 2904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880 ggcgccacctccaagttcctcggccggagtcggtcgctggatacgttagtgcttaagatt 939
Query: 2905 cgataagtctgatactgtacgacccgcgcgtctgtgccgggtgcgggtgcgggtgcgggt 2964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 940 cgataagtctgatactgtacgacccgcgcgtctgtgccgggtgcgggtgcgggtgcgggt 999
Query: 2965 gcgtgcgggtgcgtccggttcttgtttcgctgagcttgtggcacgcttccttccgcgaga 3024
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1000 gcgtgcgggtgcgtccggttcttgtttcgctgagcttgtggcacgcttccttccgcgaga 1059
Query: 3025 gtgcagtgaggacggtcggcttgtgtttctccctcacactccagttccacagcaatcaaa 3084
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1060 gtgcagtgaggacggtcggcttgtgtttct--ctcacactccagttccacagcaatcaaa 1117
Query: 3085 taagttaagtccaatagacacgctcccggctgccgggacgcctccggtcggttcccttca 3144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1118 taagttaagtccaatagacacgctcccggctgccgggacgcctccggtcggttcccttca 1177
Query: 3145 gggtgtgatcttcgtatgt 3163
|||||||||||||||||||
Sbjct: 1178 gggtgtgatcttcgtatgt 1196
Score = 593 bits (299), Expect = e-169
Identities = 308/311 (99%)
Strand = Plus / Plus
Query: 1669 ccagtcccaaggtcctccagcggttaataaagtcccgagggaagggtcagagtaaaaacc 1728
|||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 25 ccagccccaaggtcctccagcggttaataaagtcccgaggaaagggtcagagcaaaaacc 84
Query: 1729 tgtcggtccagatggtggcggcggagaagttgtctcagtgtccgtcagagatgttcgacg 1788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85 tgtcggtccagatggtggcggcggagaagttgtctcagtgtccgtcagagatgttcgacg 144
Query: 1789 tcacgctggacgagaaccagctcgaggacgcctgcgaccacatcgccgagtacctggagg 1848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 tcacgctggacgagaaccagctcgaggacgcctgcgaccacatcgccgagtacctggagg 204
Query: 1849 gttactgggcggacacccacccgcccgtcgtggagccgaccgccagagctccgcacgcct 1908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gttactgggcggacacccacccgcccgtcgtggagccgaccgccagagctccgcacgcct 264
Query: 1909 cacacgcgcccctaccgcacccgcactcgcacactcacgcgcacgcgcacacacaccatg 1968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cacacgcgcccctaccgcacccgcactcgcacactcacgcgcacgcgcacacacaccatg 324
Query: 1969 cgcaacctgat 1979
|||||||||||
Sbjct: 325 cgcaacctgat 335
>BF01040B2F03
Length = 739
Score = 402 bits (203), Expect = e-111
Identities = 212/215 (98%)
Strand = Plus / Plus
Query: 981 gagcagttcatgccatctctattgctgtcgtatgttaacaaggcggtcgctcgcgccgct 1040
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gagcagttcatgccacctctattgctgtcgtatgttaacaaggcggtcgctcgcgccgct 385
Query: 1041 tgccgctgcgcgaccgtccctaaccacctaacgacctaccaactttcatacatgaatctg 1100
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tgccgctgcgcgaccgtccttaaccacctaacgacctaccaactttcatacatgaatctg 445
Query: 1101 gtctccgagcagctcccacagcgcgtgggggctgtctcgctcactgccaccgcccgaact 1160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 446 gtctccgagcagctcccacagcgcgtgggggctgtctcgctcactgccaccgcccgagct 505
Query: 1161 catcattcatcggtgaaagttgtgtatttccttgg 1195
|||||||||||||||||||||||||||||||||||
Sbjct: 506 catcattcatcggtgaaagttgtgtatttccttgg 540
>BF01027B1C12
Length = 573
Score = 351 bits (177), Expect = 4e-96
Identities = 186/189 (98%)
Strand = Plus / Minus
Query: 1227 ggtgcgccgcccgccgggaaggagaaaagaaagccgttcttcaagaaacaggaggcctgc 1286
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 573 ggtgcgccgcccgccgggaaggagaaaaggaagccgttcttcaagaaacaggaggcctgc 514
Query: 1287 acgccctacgacgtggtgccctctatgaggcccgtcgtgctcgtggggccctcgctcaag 1346
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 513 acgccctacgacgtggtgccctctatgaggcccgtcgtactcgtggggccctcgctcaag 454
Query: 1347 ggctacgaggtcacggacatgatgcagaaggccctgttcgacttcctgaagagaaggttc 1406
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 453 ggctacgaggtcacggacatgatgcagaaggccctgttcgacttcctcaagagaaggttc 394
Query: 1407 gagggcagg 1415
|||||||||
Sbjct: 393 gagggcagg 385
Score = 252 bits (127), Expect = 3e-66
Identities = 127/127 (100%)
Strand = Plus / Minus
Query: 1412 caggataataataacccgtgtgatggcggacatatcgctagcgaagcggtcgcttctgaa 1471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 caggataataataacccgtgtgatggcggacatatcgctagcgaagcggtcgcttctgaa 179
Query: 1472 caacgcctcgaagcgggcgatcgtggagcgttccaactcccgctccacttgcctcgcgga 1531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 caacgcctcgaagcgggcgatcgtggagcgttccaactcccgctccacttgcctcgcgga 119
Query: 1532 agtccag 1538
|||||||
Sbjct: 118 agtccag 112
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 212,445
Number of extensions: 4022
Number of successful extensions: 4022
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 4011
Number of HSP's successfully gapped: 5
Length of query: 3163
Length of database: 8,280,457
Length adjustment: 18
Effective length of query: 3145
Effective length of database: 8,109,745
Effective search space: 25505148025
Effective search space used: 25505148025
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)