BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN19940 (UTR included)
(4288 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF14_2345_C1 402 e-111
>BF14_2345_C1
Length = 890
Score = 402 bits (203), Expect = e-111
Identities = 206/207 (99%)
Strand = Plus / Minus
Query: 3568 agggtttcgcggagacggccgcatcattatcagcggcggctcgtcgggggaagggcgcgg 3627
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 agggtttcgcggagacggcagcatcattatcagcggcggctcgtcgggggaagggcgcgg 238
Query: 3628 gggtgctccgtcagttgccgggggctgcggtcgcgcccctcgccctggccgcggccggcg 3687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 gggtgctccgtcagttgccgggggctgcggtcgcgcccctcgccctggccgcggccggcg 178
Query: 3688 ccgccgacgtcctgggaggtgtccgagcacacctcgcaccgcacaccacgcgtgatcacg 3747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 ccgccgacgtcctgggaggtgtccgagcacacctcgcaccgcacaccacgcgtgatcacg 118
Query: 3748 cagacaaatggcgcagaccattcacag 3774
|||||||||||||||||||||||||||
Sbjct: 117 cagacaaatggcgcagaccattcacag 91
Score = 297 bits (150), Expect = 8e-80
Identities = 190/205 (92%), Gaps = 10/205 (4%)
Strand = Plus / Minus
Query: 3366 gctagaactgctgtcgctgctctggacatcaccgcacgcatcctacatctcatacaggcg 3425
|||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 886 gctagaactgctgtcgctgctctggacatcaccgcacgcatcat----------caggcg 837
Query: 3426 acagctgaaacggcggtggacatgttgacaccggctccggctctgcccctgtcgacccag 3485
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 acagctgagacggcggtggacatgttgacaccggctccggctctgcccctgtcgacccag 777
Query: 3486 gggaggagacgtcgcagagaccgcactagacaacccgctgatatacgggagggagttacc 3545
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 776 gggaggagacgccgcagagaccggactagacaacccgctgatatacgggagggagtgacc 717
Query: 3546 agcgcatataacactgttaaagagg 3570
|||||||||||||||||||||||||
Sbjct: 716 agcgcatataacactgttaaagagg 692
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 389,623
Number of extensions: 11985
Number of successful extensions: 11985
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 11985
Number of HSP's successfully gapped: 3
Length of query: 4288
Length of database: 8,280,457
Length adjustment: 18
Effective length of query: 4270
Effective length of database: 8,109,745
Effective search space: 34628611150
Effective search space used: 34628611150
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 35 (69.9 bits)