BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN19988 (UTR included)
(1531 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01037B1H08 107 5e-23
BF01056B1D02 90 1e-17
BF01023A2A12 90 1e-17
BF01010B2F09 82 3e-15
>BF01037B1H08
Length = 758
Score = 107 bits (54), Expect = 5e-23
Identities = 81/90 (90%)
Strand = Plus / Minus
Query: 1327 ctaaatactcttagagattacatatgactcggaaaagatcacattggtacttgccagatt 1386
||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 187 ctaaatattcttagaaagtacatatgactcggaaaagatcacattggtacttgccaggtt 128
Query: 1387 tcgatcccgcacccccacatatgagaggcg 1416
|||| ||||| || ||| |||||||||||
Sbjct: 127 tcgaacccgcgccttcacgtatgagaggcg 98
>BF01056B1D02
Length = 778
Score = 89.7 bits (45), Expect = 1e-17
Identities = 63/69 (91%)
Strand = Plus / Minus
Query: 1320 gtggagtctaaatactcttagagattacatatgactcggaaaagatcacattggtacttg 1379
|||| |||||| ||| |||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 578 gtggtgtctaactacccttagaaagtacatatgactcggaaaagatcacattggtacttg 519
Query: 1380 ccagatttc 1388
|||| ||||
Sbjct: 518 ccaggtttc 510
>BF01023A2A12
Length = 723
Score = 89.7 bits (45), Expect = 1e-17
Identities = 63/69 (91%)
Strand = Plus / Minus
Query: 1320 gtggagtctaaatactcttagagattacatatgactcggaaaagatcacattggtacttg 1379
|||| ||||||||||| ||||| | ||||| |||||||||||||||||||||||||||||
Sbjct: 173 gtggtgtctaaatactgttagaaagtacatgtgactcggaaaagatcacattggtacttg 114
Query: 1380 ccagatttc 1388
|||| ||||
Sbjct: 113 ccaggtttc 105
>BF01010B2F09
Length = 764
Score = 81.8 bits (41), Expect = 3e-15
Identities = 68/77 (88%)
Strand = Plus / Plus
Query: 1320 gtggagtctaaatactcttagagattacatatgactcggaaaagatcacattggtacttg 1379
|||| ||||||||||||||||| | ||||||||||||| |||||||||||||||||||
Sbjct: 427 gtggcgtctaaatactcttagaaagtacatatgactcgatgaagatcacattggtacttg 486
Query: 1380 ccagatttcgatcccgc 1396
||| |||||| |||||
Sbjct: 487 tcaggtttcgaacccgc 503
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 218,820
Number of extensions: 5341
Number of successful extensions: 5341
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 5341
Number of HSP's successfully gapped: 4
Length of query: 1531
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1514
Effective length of database: 8,119,229
Effective search space: 12292512706
Effective search space used: 12292512706
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)