BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN19996 (UTR included)
(1921 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01052A2B11 293 5e-79
>BF01052A2B11
Length = 551
Score = 293 bits (148), Expect = 5e-79
Identities = 191/208 (91%)
Strand = Plus / Minus
Query: 1469 aaggtaacataaagaataaactacatattgtgagctagtttattacagaatccatctatt 1528
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 551 aaggtaacataaagaataaactacatattgtgagctagtttattacagaatccatgtatt 492
Query: 1529 acttagcatgaagaggtgatttgctaaaacctctgtctgcataatcagaatccttagtgc 1588
| |||||||||| ||||||| || |||||| | |||||||||||||||||| |||||||
Sbjct: 491 agttagcatgaaaaggtgatgtgttaaaacttaggtctgcataatcagaatcattagtgc 432
Query: 1589 ggtccgatttaaatggaaagccaggttgtcctggcaataccattggcttagtttttactg 1648
||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 431 ggtccgatttaaatggaaagccaggnnntcctggcaataccatnngcttagtttttactg 372
Query: 1649 tacgccaacctcctttcttagtccaatt 1676
|||||||| |||||||||||||||||
Sbjct: 371 tacgccaannncctttcttagtccaatt 344
Score = 165 bits (83), Expect = 3e-40
Identities = 98/103 (95%)
Strand = Plus / Minus
Query: 1755 attgccgttgtatttaaaatagtaatggatacatagagcacccgcagccattaagccaag 1814
|||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 343 attgccgtggtatctaaaatagtaatggatacatagagcacccgcagccactaagccaag 284
Query: 1815 tttcccagcaatgtatcggtaatcagcagctcgacttgctccc 1857
||| ||||||||||||||||||||||||||| |||||||||||
Sbjct: 283 ttttccagcaatgtatcggtaatcagcagctagacttgctccc 241
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 288,257
Number of extensions: 6119
Number of successful extensions: 6119
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 6119
Number of HSP's successfully gapped: 2
Length of query: 1921
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1904
Effective length of database: 8,119,229
Effective search space: 15459012016
Effective search space used: 15459012016
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)