BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN20004 (UTR included)
(5539 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01036X1E08 1518 0.0
BF01040A2F04 369 e-101
BF01012A1B09 105 7e-22
BF14_729_C3 82 1e-14
BF01044B2E12 74 3e-12
BF01019B1G10 72 1e-11
BF01056A1B08 70 4e-11
BF01012A1E04 70 4e-11
>BF01036X1E08
Length = 779
Score = 1518 bits (766), Expect = 0.0
Identities = 775/779 (99%)
Strand = Plus / Plus
Query: 919 taaataagacgactggaccaataaaacaaaatgttacagaccaacagaacgtcacgatgt 978
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1 taaataagacgactggaccaataaaacaaaatgttacnnnccaacagaacgtcacgatgt 60
Query: 979 tctgtgcattcgaaatttatcggccaaatgaagtgaggtggtggaaaaggggcaaagacg 1038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tctgtgcattcgaaatttatcggccaaatgaagtgaggtggtggaaaaggggcaaagacg 120
Query: 1039 acgaaattatagaactcggaacaaaagccgctaaagtgatcgatctcaaacggatgcaga 1098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 acgaaattatagaactcggaacaaaagccgctaaagtgatcgatctcaaacggatgcaga 180
Query: 1099 gtcaatatgatctccacatacgtagcccggaagacaatgggacttacatctgcgagatat 1158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gtcaatatgatctccacatacgtagcccggaagacaatgggacttacatctgcgagatat 240
Query: 1159 gggattcagtgacgtcatcgaacctgacagggggtattgacgtcatagtctacgcagcac 1218
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 241 gggattcagtgacgtcatcgaacctgacagggggtattgacgtcatagtctacgcatcac 300
Query: 1219 cacaagtagtcatagacacggtcataccgatcagtgcctcccaactattccttaattgga 1278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cacaagtagtcatagacacggtcataccgatcagtgcctcccaactattccttaattgga 360
Query: 1279 caatccgttcatacaattcaccaatcaaaagctacaatctgatgtatcgaaaattaccct 1338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 caatccgttcatacaattcaccaatcaaaagctacaatctgatgtatcgaaaattaccct 420
Query: 1339 caaccgacttcagtctgtacactactgagaagataagagttaataatatatcatttgtca 1398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 caaccgacttcagtctgtacactactgagaagataagagttaataatatatcatttgtca 480
Query: 1399 tggagggtttggagaaatctactaaatatcagctgaaattggaggtgacaactacctatg 1458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tggagggtttggagaaatctactaaatatcagctgaaattggaggtgacaactacctatg 540
Query: 1459 gatccagcaagccccatatatatgagtctatagttcggactttggataaagatccaatat 1518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gatccagcaagccccatatatatgagtctatagttcggactttggataaagatccaatat 600
Query: 1519 ttgttccacatatctccatcaatggattctcagctacttcagtgactatcggatgggcgc 1578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgttccacatatctccatcaatggattctcagctacttcagtgactatcggatgggcgc 660
Query: 1579 cacctccagaggatatagccgagttgatacactattatttattggaggcgaggaagatgg 1638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cacctccagaggatatagccgagttgatacactattatttattggaggcgaggaagatgg 720
Query: 1639 atgaggtcgcaccaaggagagcatatcactccagggacagcagaaatttgccatacatg 1697
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 atgaggtcgcaccaaggagagcatatcactccagggacagcagaaatttgccatacatg 779
>BF01040A2F04
Length = 823
Score = 369 bits (186), Expect = e-101
Identities = 193/196 (98%)
Strand = Plus / Plus
Query: 4288 agaagatgatgtcacctcctatatccgaggctacgaaatcgtgtgcggcgggcggagccg 4347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 agaagatgatgtcacctcctatatccgaggctacgaaatcgtgtgcggcgggcggagccg 687
Query: 4348 gcggttcagatgaactgcgagccaggaatcgaagcccggactgtctgccttacgacagga 4407
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 ggggttcagatgaactgcgagccaggaatcgaagcccggactgtctgccttacgacagga 747
Query: 4408 acagagtcatcctccccccactaccaggacgagattactccacatacatcaacgcttcat 4467
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 748 acagagtcatcctccccccactaccaggacgnnattactccacatacatcaacgcttcat 807
Query: 4468 tcattgaagcatatga 4483
||||||||||||||||
Sbjct: 808 tcattgaagcatatga 823
Score = 204 bits (103), Expect = 1e-51
Identities = 106/107 (99%)
Strand = Plus / Plus
Query: 4183 actacggcgacactgaaataccggcgtcaagactgaagagttccatcgacaggctcagga 4242
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1 actacggcgacactgaaataccggcctcaagactgaagagttccatcgacaggctcagga 60
Query: 4243 acacaccagagggcgctgacaagtgtctcatggaacacgagttcgag 4289
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acacaccagagggcgctgacaagtgtctcatggaacacgagttcgag 107
>BF01012A1B09
Length = 841
Score = 105 bits (53), Expect = 7e-22
Identities = 66/69 (95%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 5261 catttaaatgaaactaatatatttcggttatactacgcggattttattattttaaaaact 5320
||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||
Sbjct: 735 catttaaatgaaactaatatatttcggatacactacgcggattttattatttt-aaaact 793
Query: 5321 acataatcc 5329
|||||||||
Sbjct: 794 acataatcc 802
>BF14_729_C3
Length = 2041
Score = 81.8 bits (41), Expect = 1e-14
Identities = 63/69 (91%), Gaps = 1/69 (1%)
Strand = Plus / Minus
Query: 5261 catttaaatgaaactaatatatttcggttatactacgcggattttattattttaaaaact 5320
|||||||||||| ||| ||| ||||| ||||||||||||||||||||| ||||||||||
Sbjct: 1702 catttaaatgaagctagtattattcggatatactacgcggattttatta-tttaaaaact 1644
Query: 5321 acataatcc 5329
|||||||||
Sbjct: 1643 acataatcc 1635
>BF01044B2E12
Length = 823
Score = 73.8 bits (37), Expect = 3e-12
Identities = 49/53 (92%)
Strand = Plus / Minus
Query: 5260 acatttaaatgaaactaatatatttcggttatactacgcggattttattattt 5312
||||||||||||||||| ||| |||||| | ||||||||||||||||||||||
Sbjct: 86 acatttaaatgaaactagtatttttcggatttactacgcggattttattattt 34
>BF01019B1G10
Length = 488
Score = 71.9 bits (36), Expect = 1e-11
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 5266 aaatgaaactaatatatttcggttatactacgcggattttattattttaaaaactacata 5325
|||| ||| |||||| ||||| | ||||||||| |||||||||||||||||||||||||
Sbjct: 293 aaataaaagtaatatttttcgcatttactacgcgaattttattattttaaaaactacata 352
Query: 5326 atcc 5329
||||
Sbjct: 353 atcc 356
>BF01056A1B08
Length = 761
Score = 69.9 bits (35), Expect = 4e-11
Identities = 57/63 (90%), Gaps = 1/63 (1%)
Strand = Plus / Minus
Query: 5263 tttaaatgaaactaatatatt-tcggttatactacgcggattttattattttaaaaacta 5321
|||||||||||||||||||| |||| || || |||||||||||||||||||||||| ||
Sbjct: 309 tttaaatgaaactaatatatcctcggatacaccacgcggattttattattttaaaaaata 250
Query: 5322 cat 5324
|||
Sbjct: 249 cat 247
>BF01012A1E04
Length = 841
Score = 69.9 bits (35), Expect = 4e-11
Identities = 45/47 (95%), Gaps = 1/47 (2%)
Strand = Plus / Minus
Query: 5261 catttaaatgaaactaatata-tttcggttatactacgcggatttta 5306
||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 589 catttaaatgaaactaatatattttcggatatactacgcggatttta 543
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 554,018
Number of extensions: 11785
Number of successful extensions: 11785
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 11781
Number of HSP's successfully gapped: 9
Length of query: 5539
Length of database: 8,280,457
Length adjustment: 18
Effective length of query: 5521
Effective length of database: 8,109,745
Effective search space: 44773902145
Effective search space used: 44773902145
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 35 (69.9 bits)