BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN20055 (UTR included)
(2908 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01031B2F09 965 0.0
>BF01031B2F09
Length = 746
Score = 965 bits (487), Expect = 0.0
Identities = 540/563 (95%), Gaps = 21/563 (3%)
Strand = Plus / Plus
Query: 2346 gctccgttcccgccgcgattgcaagccgaattctccagcgacgctgacacggacgacgag 2405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 gctccgttcccgccgcgattgcaagccgaattctccagcgacgctgacacggacgacgag 71
Query: 2406 tagtcccctccccgcttccctcctcacctggtctctttaccccccccctcccgtcccgtc 2465
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 tagtcccctccccgcttccctcctcacctggtctctttaccc------------------ 113
Query: 2466 cccccccccccccttccccgtcccgtcttgtttaatcgtcctattttacgcagtagtggg 2525
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 ---ccccccccccttccccgtcccgtcttgtttaatcgtcctattttacgcagtagtggg 170
Query: 2526 actcattcctcgttcgccttccgtctaggctcagttatatcgcttagaattctgcggctt 2585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 actcattcctcgttcgccttccgtctaggctcagttatatcgcttagaattctgcggctt 230
Query: 2586 ctaaatcgtaggacgtatgaacttgaaaaaaattgtgatatttgctcattttctatgaaa 2645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 ctaaatcgtaggacgtatgaacttgaaaaaaattgtgatatttgctcattttctatgaaa 290
Query: 2646 ttctaaaaattatcgaatatgtaaggaccgttaagatcgatgataagatgtaggacgtcg 2705
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 291 ttctaaaaattatcgaatatgtaaggaccgttaagatcgatgataagatgtaggacatcg 350
Query: 2706 agttggaccatgagtaagactagcttaagatggacgccgacacgctcacacacaccgctg 2765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 agttggaccatgagtaagactagcttaagatggacgccgacacgctcacacacaccgctg 410
Query: 2766 acttgtccttgatgtttataatagacagatacttacctttttaaatattaatgctaatct 2825
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 411 acttgtccttgatgtttataatagacagatacttacctttttaattattaatgctaatct 470
Query: 2826 agaaaaaattttgaggcatccgcaaatacatacaacatatattttataaataaagtcgtc 2885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 agaaaaaattttgaggcatccgcaaatacatacaacatatattttataaataaagtcgtc 530
Query: 2886 tgtcatctcactgtatggtttta 2908
|||||||||||||||||||||||
Sbjct: 531 tgtcatctcactgtatggtttta 553
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 231,997
Number of extensions: 4289
Number of successful extensions: 4289
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 4288
Number of HSP's successfully gapped: 2
Length of query: 2908
Length of database: 8,280,457
Length adjustment: 18
Effective length of query: 2890
Effective length of database: 8,109,745
Effective search space: 23437163050
Effective search space used: 23437163050
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)