BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN20258 (UTR included)
(1471 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF14_335_C2 111 3e-24
BF01043B1E03 94 8e-19
BF01017A1F03 76 2e-13
BF01033B1B03 68 4e-11
>BF14_335_C2
Length = 1827
Score = 111 bits (56), Expect = 3e-24
Identities = 121/142 (85%), Gaps = 3/142 (2%)
Strand = Plus / Plus
Query: 1119 caccggccaagctcctctcaccaactaaccaaatttgacacgaaactactagggctgcct 1178
||||| ||||||||||||| || ||||||||||||| ||||| ||||||| |||| ||
Sbjct: 959 caccgtccaagctcctctctcc---taaccaaatttgaaacgaacctactagagctgtct 1015
Query: 1179 tggaagtacgttccaagaagaaattgatgttagttctggacaggcccaagtttttcagaa 1238
| ||||||||||| ||||| || || |||||||||||||||||||||||| ||| || |
Sbjct: 1016 tcgaagtacgttcgaagaatgaactggtgttagttctggacaggcccaagtattttagta 1075
Query: 1239 gtttgtagagcgatttagctgt 1260
| ||||||| |||||||||||
Sbjct: 1076 ggctgtagagagatttagctgt 1097
>BF01043B1E03
Length = 830
Score = 93.7 bits (47), Expect = 8e-19
Identities = 165/202 (81%), Gaps = 3/202 (1%)
Strand = Plus / Minus
Query: 1047 tagtgattgggacttgcgacacaagtgttggtttaaggggccccagtctaacacgagttg 1106
||||| ||||||||||| || || || | ||||||| ||||||| |||||| || |||
Sbjct: 431 tagtgcttgggacttgcaacccaggtataggtttaaagggcccctatctaacgcgcgtta 372
Query: 1107 aatgcacgcctgcaccggccaagctcctctcaccaactaaccaaatttgacacgaaacta 1166
| ||| | ||| ||| | ||||| ||||||| | | |||||||||||||| || ||||
Sbjct: 371 agtgctcacctccactgtccaaggtcctctctctacctaaccaaatttgaaac-aaac-- 315
Query: 1167 ctagggctgccttggaagtacgttccaagaagaaattgatgttagttctggacaggccca 1226
||||| ||||||| | ||||||||||||||| | |||||||||||||||| ||||| ||
Sbjct: 314 ctaggcctgcctttgcagtacgttccaagaatgatttgatgttagttctgggcaggctca 255
Query: 1227 agtttttcagaagtttgtagag 1248
||| |||||| || ||||||||
Sbjct: 254 agtgtttcagtaggttgtagag 233
>BF01017A1F03
Length = 782
Score = 75.8 bits (38), Expect = 2e-13
Identities = 89/105 (84%), Gaps = 2/105 (1%)
Strand = Plus / Minus
Query: 1127 aagctcctctcaccaactaaccaaatttgacacgaaactactagggctgc--cttggaag 1184
||||||||||| | | |||||||| || || || || |||||||||||| ||||||||
Sbjct: 222 aagctcctctctctatctaaccaacttagaaactaatgtactagggctgcgccttggaag 163
Query: 1185 tacgttccaagaagaaattgatgttagttctggacaggcccaagt 1229
||||||||||||| |||||||||||||| ||||| ||| |||||
Sbjct: 162 tacgttccaagaatgaattgatgttagttttggactggctcaagt 118
>BF01033B1B03
Length = 826
Score = 67.9 bits (34), Expect = 4e-11
Identities = 37/38 (97%)
Strand = Plus / Minus
Query: 1293 ttgaaataaaacaaatatttttcggatttactacgcgt 1330
|||||||||||| |||||||||||||||||||||||||
Sbjct: 280 ttgaaataaaactaatatttttcggatttactacgcgt 243
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 188,566
Number of extensions: 4200
Number of successful extensions: 4200
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 4197
Number of HSP's successfully gapped: 4
Length of query: 1471
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1454
Effective length of database: 8,119,229
Effective search space: 11805358966
Effective search space used: 11805358966
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)