BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN20604 (UTR included)
(1993 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF14_2430_C1 103 1e-21
BF14_1695_C1 86 2e-16
BF01025B1E11 80 2e-14
BF14_1645_C1 78 6e-14
BF01057B2G06 72 4e-12
BF01029B2F12 70 1e-11
BF14_3240_C1 68 6e-11
>BF14_2430_C1
Length = 830
Score = 103 bits (52), Expect = 1e-21
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 1809 acactggcagaatatactgtgcacgtctttgcacggatgaaggccatgtttaaaacaacc 1868
|||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||
Sbjct: 182 acactggcagaatatactgtgcacatctttgcacgtatgaaggccatatttaaaacaacc 241
Query: 1869 tacc 1872
||||
Sbjct: 242 tacc 245
>BF14_1695_C1
Length = 1407
Score = 85.7 bits (43), Expect = 2e-16
Identities = 46/47 (97%)
Strand = Plus / Plus
Query: 1809 acactggcagaatatactgtgcacgtctttgcacggatgaaggccat 1855
||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1189 acactggcagaatatactgtgcacgtctttgcacggatgaatgccat 1235
>BF01025B1E11
Length = 786
Score = 79.8 bits (40), Expect = 2e-14
Identities = 49/52 (94%)
Strand = Plus / Plus
Query: 1811 actggcagaatatactgtgcacgtctttgcacggatgaaggccatgtttaaa 1862
|||||||||||||| |||||||||| ||||||||||||||||||| ||||||
Sbjct: 220 actggcagaatatattgtgcacgtccttgcacggatgaaggccatatttaaa 271
>BF14_1645_C1
Length = 793
Score = 77.8 bits (39), Expect = 6e-14
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 1809 acactggcagaatatactgtgcacgtctttgcacggatgaaggccat 1855
||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 132 acactggcagaatatactgtgcacgtcttggcacgggtgaaggccat 178
>BF01057B2G06
Length = 766
Score = 71.9 bits (36), Expect = 4e-12
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 1812 ctggcagaatatactgtgcacgtctttgcacggatgaaggccatgtttaaaacaac 1867
|||||||||||| ||||||| || | |||||||||||||||||| |||||||||||
Sbjct: 241 ctggcagaatatgctgtgcatgtgtctgcacggatgaaggccatatttaaaacaac 296
>BF01029B2F12
Length = 749
Score = 69.9 bits (35), Expect = 1e-11
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 1809 acactggcagaatatactgtgcacgtctttgcacggatgaaggccat 1855
||||||||||||||||||||||| |||||||||||| || |||||||
Sbjct: 525 acactggcagaatatactgtgcatgtctttgcacggctggaggccat 479
>BF14_3240_C1
Length = 2110
Score = 67.9 bits (34), Expect = 6e-11
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 1810 cactggcagaatatactgtgcacgtctttgcacggatgaaggccat 1855
||||||| ||||||||||||||| ||| ||||||||||||||||||
Sbjct: 1625 cactggcggaatatactgtgcacttctctgcacggatgaaggccat 1670
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 217,684
Number of extensions: 4654
Number of successful extensions: 4654
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 4654
Number of HSP's successfully gapped: 7
Length of query: 1993
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1976
Effective length of database: 8,119,229
Effective search space: 16043596504
Effective search space used: 16043596504
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)