BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN20659 (UTR included)
(6538 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF14_2681_C1 1727 0.0
>BF14_2681_C1
Length = 879
Score = 1727 bits (871), Expect = 0.0
Identities = 877/879 (99%)
Strand = Plus / Plus
Query: 4487 aggatttaaaatcgccgaccacgtagtagatctgtctaaaaaggcacagcaaaatattga 4546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aggatttaaaatcgccgaccacgtagtagatctgtctaaaaaggcacagcaaaatattga 60
Query: 4547 tcaagatttaacaggtgtactaccagaatgtaatatgaaatgtgactccgagccatgtaa 4606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcaagatttaacaggtgtactaccagaatgtaatatgaaatgtgactccgagccatgtaa 120
Query: 4607 aaatggcggtatttgtaccgaagacttcacaaaccaagagagcagctgtgattgtgaatt 4666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaatggcggtatttgtaccgaagacttcacaaaccaagagagcagctgtgattgtgaatt 180
Query: 4667 aacaagttattttggagaatactgtatggaagagaaaggagcagattttaatggcgagag 4726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aacaagttattttggagaatactgtatggaagagaaaggagcagattttaatggcgagag 240
Query: 4727 cattttacaaaggaaatttgttttatctggtcccatttttgaggttaaaataaagttggc 4786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cattttacaaaggaaatttgttttatctggtcccatttttgaggttaaaataaagttggc 300
Query: 4787 attctccagcaacgaccttcgccaaaagaacacagttttattgcttgtgcaaacagaaaa 4846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 attctccagcaacgaccttcgccaaaagaacacagttttattgcttgtgcaaacagaaaa 360
Query: 4847 caaacgcagctattatcttctggtagcaataacacaagacggttacttaaaattcgaaga 4906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 caaacgcagctattatcttctggtagcaataacacaagacggttacttaaaattcgaaga 420
Query: 4907 agatcgcgaagattctgcgtatggagtagaatttaagaacagaaactttttaaacggcgc 4966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 agatcgcgaagattctgcgtatggagtagaatttaagaacagaaactttttaaacggcgc 480
Query: 4967 ccggcatacagtatattatacaaggtcagatgacgaagcgaaactcttaatagacagaat 5026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ccggcatacagtatattatacaaggtcagatgacgaagcgaaactcttaatagacagaat 540
Query: 5027 agaagtgccattagagaagttacctccacaagatctgtggaaggtgtttgacgttggatc 5086
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 agaagtgccattagaaaagttacctccacaagatctgtggaaggtgtttgacgttggatc 600
Query: 5087 taacgaagtacaaataggaggactcaatactaccgatccacggcttaaaatatacaaggg 5146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 taacgaagtacaaataggaggactcaatactaccgatccacggcttaaaatatacaaggg 660
Query: 5147 ttacaatggatgcctctctaatattttcgtggaaataaacgagcacgttatgaaacctct 5206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ttacaatggatgcctctctaatattttcgtggaaataaacgagcacgttatgaaacctct 720
Query: 5207 agaggagtatatgcttttcacgcgttctgactcagaaaaggtaaacgcagtcaacgctca 5266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 agaggagtatatgcttttcacgcgttctgactcagaaaaggtaaacgcagtcaacgctca 780
Query: 5267 gggtgtgaggagcgcgcagtgttccgcggactttgatgaagcgtggcctgagcacgatca 5326
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 gggtgtgaggagcgctcagtgttccgcggactttgatgaagcgtggcctgagcacgatca 840
Query: 5327 gcttggcgctacacataacggcagcttccttatcagtgt 5365
|||||||||||||||||||||||||||||||||||||||
Sbjct: 841 gcttggcgctacacataacggcagcttccttatcagtgt 879
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 115,212
Number of extensions: 13054
Number of successful extensions: 13054
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 13054
Number of HSP's successfully gapped: 1
Length of query: 6538
Length of database: 8,280,457
Length adjustment: 18
Effective length of query: 6520
Effective length of database: 8,109,745
Effective search space: 52875537400
Effective search space used: 52875537400
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 35 (69.9 bits)