BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN20838 (UTR included)
(1157 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01014B2F02 92 2e-18
BF01056B2D01 90 9e-18
BF01048A1E04 80 9e-15
BF01017A1F03 78 4e-14
BF01055B2F03 68 3e-11
>BF01014B2F02
Length = 623
Score = 91.7 bits (46), Expect = 2e-18
Identities = 79/90 (87%)
Strand = Plus / Minus
Query: 1 agtcccaggcgctgtcgtagctcctctccctgcgtcattggacccggcacccgcacggtg 60
||||| |||||||| | ||||||||||||||| | ||||||||||||||||||||||
Sbjct: 608 agtcctaggcgctgctgaagctcctctccctgcaacgctggacccggcacccgcacggtg 549
Query: 61 catccatggaatgatgagaggtttcgtctc 90
|||||| ||||| ||||||||||||||||
Sbjct: 548 catccactgaatgctgagaggtttcgtctc 519
>BF01056B2D01
Length = 728
Score = 89.7 bits (45), Expect = 9e-18
Identities = 81/91 (89%), Gaps = 4/91 (4%)
Strand = Plus / Minus
Query: 2 gtcccaggcgctgtcgtagctcctctccctgc---gtcattggacccggcacccgcacgg 58
|||||||||||||| | ||||||||||||||| || || |||||||||||||||||||
Sbjct: 166 gtcccaggcgctgttgaagctcctctccctgcaatgtgat-ggacccggcacccgcacgg 108
Query: 59 tgcatccatggaatgatgagaggtttcgtct 89
|| || ||||||||| |||||||||||||||
Sbjct: 107 tgaattcatggaatgttgagaggtttcgtct 77
>BF01048A1E04
Length = 789
Score = 79.8 bits (40), Expect = 9e-15
Identities = 49/52 (94%)
Strand = Plus / Plus
Query: 39 tggacccggcacccgcacggtgcatccatggaatgatgagaggtttcgtctc 90
|||||||||||||||||||||| |||||||||| ||| ||||||||||||||
Sbjct: 8 tggacccggcacccgcacggtgaatccatggaaagataagaggtttcgtctc 59
>BF01017A1F03
Length = 782
Score = 77.8 bits (39), Expect = 4e-14
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 40 ggacccggcacccgcacggtgcatccatggaatgatgagaggtttcgtctc 90
||||||||||||||||||||| |||||||||||| ||||||| ||||||||
Sbjct: 296 ggacccggcacccgcacggtgtatccatggaatgctgagaggattcgtctc 346
>BF01055B2F03
Length = 776
Score = 67.9 bits (34), Expect = 3e-11
Identities = 65/75 (86%), Gaps = 4/75 (5%)
Strand = Plus / Plus
Query: 528 ccatcccatagcttgtgtggtatcaggaatctcctggttcacacggctcggt----gttc 583
|||| ||||||| |||||||| |||||| ||||||||||||| |||| |||| ||||
Sbjct: 597 ccattccatagcgtgtgtggtgtcaggagtctcctggttcacgcggcgcggtgttggttc 656
Query: 584 cgcggagtcagcggc 598
|||||||||||||||
Sbjct: 657 cgcggagtcagcggc 671
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 141,210
Number of extensions: 2736
Number of successful extensions: 2736
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 2735
Number of HSP's successfully gapped: 5
Length of query: 1157
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1140
Effective length of database: 8,119,229
Effective search space: 9255921060
Effective search space used: 9255921060
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)