BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN21189 (UTR included)
(3232 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01012A1E04 94 2e-18
BF01056A1B08 92 7e-18
BF01025B2E05 92 7e-18
BF01012A1B09 84 2e-15
>BF01012A1E04
Length = 841
Score = 93.7 bits (47), Expect = 2e-18
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 231 atccgaaaatatattagtatcatttaaatgaataaaactcgcgagagtctcagatctca 289
|||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 560 atccgaaaatatattagtttcatttaaatgaataaaactcgcgaaagtcttagatctca 618
>BF01056A1B08
Length = 761
Score = 91.7 bits (46), Expect = 7e-18
Identities = 55/58 (94%)
Strand = Plus / Minus
Query: 233 ccgaaaatatattagtatcatttaaatgaataaaactcgcgagagtctcagatctcat 290
|||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 153 ccgaaaatatattagtttcatttaaatgaataaaactcgcgaaagtcttagatctcat 96
>BF01025B2E05
Length = 759
Score = 91.7 bits (46), Expect = 7e-18
Identities = 58/62 (93%)
Strand = Plus / Plus
Query: 231 atccgaaaatatattagtatcatttaaatgaataaaactcgcgagagtctcagatctcat 290
||||||||||||| |||| ||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 60 atccgaaaatatactagtttcatttaaatgaataaaactcgcgaaagtcttagatctcat 119
Query: 291 ta 292
||
Sbjct: 120 ta 121
>BF01012A1B09
Length = 841
Score = 83.8 bits (42), Expect = 2e-15
Identities = 51/54 (94%)
Strand = Plus / Minus
Query: 237 aaatatattagtatcatttaaatgaataaaactcgcgagagtctcagatctcat 290
|||||||||||| ||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 758 aaatatattagtttcatttaaatgaataaaactcgcgacagtcttagatctcat 705
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 483,125
Number of extensions: 10966
Number of successful extensions: 10966
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 10966
Number of HSP's successfully gapped: 4
Length of query: 3232
Length of database: 8,280,457
Length adjustment: 18
Effective length of query: 3214
Effective length of database: 8,109,745
Effective search space: 26064720430
Effective search space used: 26064720430
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)