BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN21295 (UTR included)
(1387 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01031A2H02 674 0.0
BF01021A2F10 86 2e-16
BF01025A1H05 80 1e-14
BF14_1341_C1 74 7e-13
BF01038A2H08 72 3e-12
>BF01031A2H02
Length = 663
Score = 674 bits (340), Expect = 0.0
Identities = 356/361 (98%), Gaps = 4/361 (1%)
Strand = Plus / Plus
Query: 1031 agacatttcttttgcatgtattgtcattgaaagaaagtataacatctatctattttacaa 1090
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1 agacatttcttttgcatgtattgtcattgaaagaaagtataacatctatttattttacaa 60
Query: 1091 tcatcaatttagcaattcactcatttggatgcatcctatcgcgattgtttgattattttt 1150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcatcaatttagcaattcactcatttggatgcatcctatcgcgattgtttgattattttt 120
Query: 1151 taatttgtagaagaccaacaatagtgattgatcgacatgatgctctcagactgatgcaag 1210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 taatttgtagaagaccaacaatagtgattgatcgacatgatgctctcagactgatgcaag 180
Query: 1211 taacaccaatatattgacacattgcttcaatttgcactcacaatatgctatgatatgtta 1270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 taacaccaatatattgacacattgcttcaatttgcactcacaatatgctatgatatgtta 240
Query: 1271 tgctttgtgttttttaaaccggctactaactgttaaatatgttagtgtggtaactcacta 1330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tgctttgtgttttttaaaccggctactaactgttaaatatgttagtgtggtaactcacta 300
Query: 1331 attttatgattttgacccaaaatattga----aatttgtttggaacttattggggtgtaa 1386
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 301 attttatgattttgacccaaaatattgaaattaatttgtttggaacttattggggtgtaa 360
Query: 1387 a 1387
|
Sbjct: 361 a 361
>BF01021A2F10
Length = 792
Score = 85.7 bits (43), Expect = 2e-16
Identities = 49/51 (96%)
Strand = Plus / Minus
Query: 243 aggctaaaaaggactcgtatccagagccgtacaaacatttacaaaaaaaaa 293
||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 97 aggctcaaaaggactcgtatccagagccgtaaaaacatttacaaaaaaaaa 47
>BF01025A1H05
Length = 756
Score = 79.8 bits (40), Expect = 1e-14
Identities = 49/52 (94%)
Strand = Plus / Minus
Query: 243 aggctaaaaaggactcgtatccagagccgtacaaacatttacaaaaaaaaaa 294
||||| |||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 296 aggctcaaaaggactcgtatccagagccctaaaaacatttacaaaaaaaaaa 245
>BF14_1341_C1
Length = 1009
Score = 73.8 bits (37), Expect = 7e-13
Identities = 50/53 (94%), Gaps = 1/53 (1%)
Strand = Plus / Plus
Query: 243 aggctaaaaaggactcgtatccagagccgt-acaaacatttacaaaaaaaaaa 294
||||| |||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 943 aggctcaaaaggactcgtatccagagccgtaaaaaacatttacaaaaaaaaaa 995
>BF01038A2H08
Length = 781
Score = 71.9 bits (36), Expect = 3e-12
Identities = 42/44 (95%)
Strand = Plus / Minus
Query: 249 aaaaggactcgtatccagagccgtacaaacatttacaaaaaaaa 292
||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 522 aaaaggactcgtatccagagccgtaaaaatatttacaaaaaaaa 479
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 250,274
Number of extensions: 20435
Number of successful extensions: 20435
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 20433
Number of HSP's successfully gapped: 5
Length of query: 1387
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1370
Effective length of database: 8,119,229
Effective search space: 11123343730
Effective search space used: 11123343730
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)